View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6897_high_7 (Length: 237)
Name: NF6897_high_7
Description: NF6897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6897_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 1767916 - 1768071
Alignment:
| Q |
64 |
gagaaaaagggaaagtttcaaattacaagctaaccgtgattttttgcttcaacttgtcaaactagctacttaacttttccactcactccatcaaccttcc |
163 |
Q |
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| T |
1767916 |
gagaaaaagggaaagtttcaaattacaagctaaccgtgattttttgcttcaacttgtcaaactagctacttaacttttccactcactccatcaaccttcc |
1768015 |
T |
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| Q |
164 |
agtcacctaatacacaaatgacaaatatgttaaatggaatttttgagtcacctagt |
219 |
Q |
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| T |
1768016 |
agtcacctaatacacaaatgacaaatatgttaaatggaatttttgagtcacctagt |
1768071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 1765480 - 1765597
Alignment:
| Q |
70 |
aagggaaagtttcaaattacaagctaaccgtgatttttt-gcttcaacttgtcaaactagctacttaacttttccactcactccatcaaccttccagtca |
168 |
Q |
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|||| |||||||||||||| |||||||||| |||||| ||||| |||||||||||||| ||| | | |||| ||||||||| || ||||| ||| |
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| T |
1765480 |
aaggaaaagtttcaaattagtagctaaccgtactttttttgcttccacttgtcaaactagttacct-----tgccacccactccatcgacattccattca |
1765574 |
T |
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| Q |
169 |
cctaatacacaaatgacaaatat |
191 |
Q |
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| T |
1765575 |
cctaatacacaaatgaccaatat |
1765597 |
T |
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