View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6897_low_1 (Length: 640)
Name: NF6897_low_1
Description: NF6897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6897_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Complemental strand, 33585024 - 33584389
Alignment:
| Q |
1 |
gctccagctttgctcttagattgggccaaaccgttttttcctctgcttctcttttcttcatgtgtttggatgttgatttctatggttactctgctttctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33585024 |
gctccagctttgctcttagattgggccaaaccgttttttcctctgcttctcttttcttcatgtgtttggatgttgatttctatggttactctgctttctg |
33584925 |
T |
|
| Q |
101 |
gttagcattcttaattttctgtttcatatcaaatcatgnnnnnnnnnnnnnnnnnnnnngggtttgtcttattttgatgttgcttatgtaaagtttgtaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33584924 |
gttagcattcttaattttctgtttcgtatcaaatcatgtttttttctttctttctttctgggtttgtcttattttgatgttgcttatgtaaagtttgtaa |
33584825 |
T |
|
| Q |
201 |
ctttattaattttacttttgtccctgttttttcttacttgagtttggatggtgggtccagtgtttttatgagttctgaatatgtttggtaaaattgatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33584824 |
ctttattaattttacttttgtccctgttttttcttacttgagtttggatggtgggtccagtgtttttatgagttctgaatatgtttggtaaaattgatca |
33584725 |
T |
|
| Q |
301 |
atgaaaaatactaaagaaataaaaatagttggggattttacaaggagtgttgtcttagttaagctaattag-ggggtaaaagtattatattttg--gaag |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
33584724 |
atgaaaaatactaaagaaataaaaatagttggggattttacaaggagtgttgtcttagttaagctaattaggggggtaaaagtattatattttggagaag |
33584625 |
T |
|
| Q |
398 |
tcaggacagtttttgtgtgctgcaaatatattgtttcaaa---nnnnnnncaaaggc-----ctaatacacgctatgaagtagagacacatatacggaca |
489 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33584624 |
tcaggacagtttttgggtgctgcaaatatattgtttcaaattttttttttcaaaggcaagtactaatacacgctatgaagtagagacacatatacggaca |
33584525 |
T |
|
| Q |
490 |
ttgacactgataataaactgagaaataaaagtcttgaatgtaattacatatgttgatgtcgtgttagt-tccaacattgtaacatgtcagacaccgaaca |
588 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
33584524 |
ttgacaccgataataaattgagaaataaaagtcttgaatgtaattacatatgttgatgtcgtgttagtgtccaacattgaaacatgtcagacaccgaaca |
33584425 |
T |
|
| Q |
589 |
caactttgatatgaagtgtcggacctacattgatgt |
624 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
33584424 |
caactttgatatgaagtgtcggacctacattaatgt |
33584389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 6964739 - 6964788
Alignment:
| Q |
33 |
gttttttcctctgcttctcttttcttcatgtgtttggatgttgatttcta |
82 |
Q |
| |
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||||| || ||||||||||||| ||||||||||||||||||| |||||| |
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| T |
6964739 |
gttttctcttctgcttctctttgtttcatgtgtttggatgttggtttcta |
6964788 |
T |
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