View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6897_low_17 (Length: 202)
Name: NF6897_low_17
Description: NF6897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6897_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 50548571 - 50548403
Alignment:
| Q |
14 |
tttggtgtttaatgatggagtatttggtaatatcttcagaagaaaaaaggaccttgagtttcagatttgtaaaattcagaaacgacttgaagtagtagat |
113 |
Q |
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| T |
50548571 |
tttggtgtttaatgatgaagtatttggtaatatcttcagaagaaaaaaggaccttgagtttcagatttgtaaaattcagaaacgactggaagtagtagat |
50548472 |
T |
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| Q |
114 |
tctgtttggcttaaccttcgagaacgtgagctccaaaaacaatatagagaagttctccaacaagaggag |
182 |
Q |
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| T |
50548471 |
tctgtttggcttaaccttcgagaacgtgagctccaaaaacaatatagagaagttctccaacaagaggag |
50548403 |
T |
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