View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6897_low_2 (Length: 536)
Name: NF6897_low_2
Description: NF6897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6897_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 521
Target Start/End: Complemental strand, 36198864 - 36198356
Alignment:
| Q |
13 |
aatatctgctctaatcaacttgcttaagcttaatttatgaaacacttgattgatactttcttcggttatatcattgctcgtatatacatcgcatgccttg |
112 |
Q |
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| T |
36198864 |
aatatctgctctaatcaacttgcttaagcttaagttatgaaacacttgattgatactttcttcggttaccacattgctcgtatatacatcgcttgacttg |
36198765 |
T |
|
| Q |
113 |
aaatcctgaagaacgggacatccatcaagaagcaacaaaatctctcgttcatcaacaaacataacgcggtccaaatgaagggtttttagcaatggaaatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36198764 |
aaatcctgaagaacgggacatccatcaagaagcaacaaaatctctcgttcatcaacaaacataacgcggtccaaatgaagggtttttagcaatggaaatc |
36198665 |
T |
|
| Q |
213 |
caaatccaactgaagaaaacgaaaaaccctttgcatcgaaccaactaagccttagggttactaatgttttacaactaaagatagtattggggaacttggg |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
36198664 |
caaatccaactgaagaaaacgaaaaaccctttacatggaaccaactaagccttagggttactaatgttttacaactaaagatagtattgggcaatttggg |
36198565 |
T |
|
| Q |
313 |
cagtagaaaaccggggggaattggatcattgagcaaattgagaaggagatgaagatgcttaactttgcgttgaacaacaaggttaacccattttgcgaga |
412 |
Q |
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| T |
36198564 |
gagtagaaaaccggggggaattggatcattgagcaaattgagaaggagatgaagattcttaactttgcgttgaacaacaaggttaacccattttgcgaga |
36198465 |
T |
|
| Q |
413 |
ttgggaatgctaagagatgtgacgtgattacgaccagcagcatattcaacgtccacgataaaactgtcgatggaatgattaccagtggcttctcgcgaga |
512 |
Q |
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| T |
36198464 |
ttgggaatgctaagagatgtgacgtgattacgactagcagcatattcaacgtccacgataaaactgtcgatggaatgattaccagtggcttctcgcgaga |
36198365 |
T |
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| Q |
513 |
gcataaaat |
521 |
Q |
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||||||||| |
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| T |
36198364 |
gcataaaat |
36198356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 35767656 - 35767606
Alignment:
| Q |
190 |
aagggtttttagcaatggaaatccaaatccaactgaagaaaacgaaaaacc |
240 |
Q |
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| T |
35767656 |
aagggttttgagtgatggaaatccaaatccaattgaagaaaaagaaaaacc |
35767606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 1722885 - 1722947
Alignment:
| Q |
175 |
aacgcggtccaaatgaagggtttttagcaatggaaatccaaatccaactgaagaaaacgaaaa |
237 |
Q |
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| T |
1722885 |
aacgcggttcaaatgaagggttttcagcaagggaaatccaaatccagtagaagaaaaagaaaa |
1722947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 1012871 - 1012931
Alignment:
| Q |
359 |
agatgaagatgcttaactttgcgttgaacaacaaggttaacccattttgcgagattgggaa |
419 |
Q |
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||||||||||| || | ||||||||||||||||||||| | |||||| | || |||||||| |
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| T |
1012871 |
agatgaagatggttgagtttgcgttgaacaacaaggttgatccatttagtgacattgggaa |
1012931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 28450169 - 28450225
Alignment:
| Q |
96 |
atacatcgcatgccttgaaatcctgaagaacgggacatccatcaagaagcaacaaaa |
152 |
Q |
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|||||| ||||||||||||||||| ||| || ||||||||| | || |||||||||| |
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| T |
28450169 |
atacatggcatgccttgaaatcctcaaggacaggacatccagcgagtagcaacaaaa |
28450225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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