View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6897_low_3 (Length: 462)
Name: NF6897_low_3
Description: NF6897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6897_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 56 - 447
Target Start/End: Complemental strand, 26454779 - 26454388
Alignment:
| Q |
56 |
ctcatcaatccaagcaaaaaacattacaatgaaaagggtttaggtttnnnnnnnctaaccttctagcaaatgaaagagtatcaggcctggtctgctcctg |
155 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26454779 |
ctcatcaatccaagcaaacaacattacaatgaaaagggtttaggtttaaaaaaactaaccttctagcaaatgaaagagtatcaggcctgatctgctcctg |
26454680 |
T |
|
| Q |
156 |
ataacagtgatctatttccatcggagcttcttccatagtatttgatggacctacattaatcaactcaaatattataaaaatttaaatactactctataga |
255 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26454679 |
ataacagtcatctatttccatcggagcttcttccatagtatttgatggacctacattaatcaactcaaatattataaaaatttaaatactactatataga |
26454580 |
T |
|
| Q |
256 |
tgaagcattgacaataacattgacttcagacacgacactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatgg |
355 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26454579 |
tgaagcattgacaataacatggacttcagacacgagactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatatacaccaacatgg |
26454480 |
T |
|
| Q |
356 |
atcatacacaacactgactcaaaaccacttcgatcgatctgatcttaaatatattgaagaacgcccaggttaaagaaaattgtcgaatgtga |
447 |
Q |
| |
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|||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26454479 |
atcagacatagcactgacacaaaaccacttcgatcgatctgatcttaaatatattgaagaacgcccaggttaaagaaaattgtcgaaagtga |
26454388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 59 - 417
Target Start/End: Complemental strand, 26446598 - 26446240
Alignment:
| Q |
59 |
atcaatccaagcaaaaaacattacaatgaaaagggtttaggtttnnnnnnnctaaccttctagcaaatgaaagagtatcaggcctggtctgctcctgata |
158 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||||| ||| | |||||||||||| |||||||||||| || ||||||| ||||| |
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| T |
26446598 |
atcaatccaagcaaacaacattactatgaaaagggtt-aggtttaaataa-ctatctttctagcaaatggaagagtatcaggtgtgatctgctcttgata |
26446501 |
T |
|
| Q |
159 |
acagtgatctatttccatcggagcttcttccatagtatttgatggacctacattaatcaactcaaatattataaaaatttaaatactactctatagatga |
258 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26446500 |
acagtcatctatttccattagagcttcttccatggtatttgatggacctacattaatcatctcaaatattataaaaatttaaata-tactctatagatga |
26446402 |
T |
|
| Q |
259 |
agcattgacaataacattgacttcagacacgacac--taactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatgga |
356 |
Q |
| |
|
|||| || ||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26446401 |
agcaatggcaataacatggacttcagacacaacactataaatcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatgga |
26446302 |
T |
|
| Q |
357 |
tcatacacaacactgactca-aaaccacttcgatcgatctgatcttaaatatattgaagaac |
417 |
Q |
| |
|
||| |||||||| ||| ||| | |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
26446301 |
tcagacacaacattgattcagacaccacttcaatcgatctgatcttaaatatattaaagaac |
26446240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 150 - 372
Target Start/End: Original strand, 26449005 - 26449227
Alignment:
| Q |
150 |
ctcctgataacagtgatctatttccatcggagcttcttccatagtatttgatggacctacattaatcaactcaaatattataaaaatttaaatactactc |
249 |
Q |
| |
|
|||||||||| ||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449005 |
ctcctgataatagtcatctatttccatcagaacttcttccatagtatttgaaggacctacattaatcaactcaaatattataaaaatttaaatactactc |
26449104 |
T |
|
| Q |
250 |
tatagatgaagcattgacaataacattgacttcagacacgacactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacacca |
349 |
Q |
| |
|
||||||||||||| |||| ||||||| ||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
26449105 |
tatagatgaagcaatgactataacatggacgtcagacacaacactaactcatagacaaccctaataatttaagaaaatataagagatctaatgtacacca |
26449204 |
T |
|
| Q |
350 |
acatggatcatacacaacactga |
372 |
Q |
| |
|
|||||||| | | |||||||||| |
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|
| T |
26449205 |
acatggattagatacaacactga |
26449227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 26448947 - 26448993
Alignment:
| Q |
56 |
ctcatcaatccaagcaaaaaacattacaatgaaaagggtttaggttt |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
26448947 |
ctcatcaatccaagcaaacaacattacaatgaaaagggtttaagttt |
26448993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 56 - 366
Target Start/End: Complemental strand, 29673672 - 29673360
Alignment:
| Q |
56 |
ctcatcaatccaagcaaaaaacattacaatgaaaagggtttaggtttnnnnnnnctaaccttctagcaaatgaaagagtatcaggcctggtctgctcctg |
155 |
Q |
| |
|
|||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
29673672 |
ctcatcaatccaagcaaacaacattacattggaaagggtttaggtttaaaaaa-ctaaccttctagcaaatggaagagtatcaggcttgatctgctcctg |
29673574 |
T |
|
| Q |
156 |
ataacagtgatctatttccatcggagcttcttccatagtatttgatggacctacattaatcaactcaaatattataaaaatt-taaatactactctatag |
254 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||||| |||||||||| | |||||||||||||||||| ||||||||| || ||||||||||||| || |
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|
| T |
29673573 |
ataacagtcatctatatccatcagagcttcttccattgtatttgatgaatctacattaatcaactcaataattataaaatttcaaaatactactctaaag |
29673474 |
T |
|
| Q |
255 |
atga--agcattgacaataacattgacttcagacacgacactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaaca |
352 |
Q |
| |
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|||| | || ||||||||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29673473 |
atgatcaacaatgacaataacacagacgtcagacacaacactaactcgtagacaaccctaataatttaagaaaatataagcgatcaaatgtacaccaaca |
29673374 |
T |
|
| Q |
353 |
tggatcatacacaa |
366 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
29673373 |
tgtatcagacacaa |
29673360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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