View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6897_low_5 (Length: 409)
Name: NF6897_low_5
Description: NF6897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6897_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 48818106 - 48818499
Alignment:
| Q |
15 |
cagagaacactgattggaatgagaggagtgtgagtgcagagaaaagaacaagtttcatggtggtggaaaaagccattgtgcgctataacaagcttcacta |
114 |
Q |
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| T |
48818106 |
cagagaacactgattggaatgagaggagtgtgagtgcagagaaaagaacaagtttcatggtggtggaaaaagccatggtgagctataacaagcttcacta |
48818205 |
T |
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| Q |
115 |
tgtcttggtgtttgttgtgtgaaatgtaagctcctcagggtgatcttatatagcagtgaatgcacacacgttaatacgttatcaatcaatttctctatat |
214 |
Q |
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| T |
48818206 |
tgtcttggtgtttgttgtgtgaaatgtaagctcctcagggtgatcttatatagcagtgaatgcacacacgttaataggttatcaatcaatttctctatat |
48818305 |
T |
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| Q |
215 |
aaaatgaaaatcattatttccgcatatcaataattata-ttttgtttattcacgaatgatacgataataatatatgaaaatgctaaagaatgtctcttag |
313 |
Q |
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| T |
48818306 |
aaaatgaaaatcattatttccgcatatcaataattatatttttctttattcacgaatgatacgataataatatatgaaaatgttaaagaatctctcttag |
48818405 |
T |
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| Q |
314 |
accctctttaaaaattagatcttgctaacttgtatcataacattaaaagtttaactttggaaattgtgcacttataaccttaaaagtttaaaaa |
407 |
Q |
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| T |
48818406 |
atcctctttaaaaattaggtcttgctaacttgtatcataacattaaaagtttaactttggaaattgtgcattcataacattaaaagtttaaaaa |
48818499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 48792555 - 48792650
Alignment:
| Q |
15 |
cagagaacactgattggaatgagaggagtgtgagtgcagagaaaagaacaagtttcatggtggtggaaaaagccattgtgcgctataacaagcttcact |
113 |
Q |
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| T |
48792555 |
cagagaccactgcttggaagtagaggagtgtaagaactgagaaaagagctagtttcatggtggtgg---aagccactgtgagctatagctagcttcact |
48792650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 18393300 - 18393337
Alignment:
| Q |
370 |
ttggaaattgtgcacttataaccttaaaagtttaaaaa |
407 |
Q |
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| T |
18393300 |
ttggaaattgtgcatttataaccttaaaaatttaaaaa |
18393337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 11935978 - 11936022
Alignment:
| Q |
363 |
tttaactttggaaattgtgcacttataaccttaaaagtttaaaaa |
407 |
Q |
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| T |
11935978 |
tttaactttgaaaattgtgcattcgtaaccttaaaagtttaaaaa |
11936022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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