View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6898_high_1 (Length: 631)
Name: NF6898_high_1
Description: NF6898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6898_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 158 - 622
Target Start/End: Original strand, 14728177 - 14728641
Alignment:
| Q |
158 |
tggccatccttcatccataaataagaaaaatccctacacaagaatcaataaacaagtcattgaacagaaataattttactattagctgtgaaacatggta |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14728177 |
tggccatccttcatccataaataagaaaaatccctacacaagaatcaataaacaagtcaatgaacagaaataattttactattagctgtgaaacatggta |
14728276 |
T |
|
| Q |
258 |
gaagaagcaagatacgtgatgtaccttagaactgtgaagaacttccagattaggagtcttgtggaaaatgcttgctaatacgtcactggtggggtaaaaa |
357 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14728277 |
gaagaagcaagatacgtgatgtaccttagaaatgtgaagaacttccagattaggagtcttgtggaaaatgcttgctaatacttcactggtggggtaaaaa |
14728376 |
T |
|
| Q |
358 |
taccccaagggcacatcaagatgcgtcaaattgaagaacggaggcaaaagatgaagagtgtcttttgcatagttaagacactagtaagggaaacaaaaat |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14728377 |
taccccaagggcacatcaagatgcgtcaaattgaagaacggaggcaaaagatgaagagtgtcttttgcatagttaagacactagtaagggaaacaaaaat |
14728476 |
T |
|
| Q |
458 |
agatacatcattgtaatacataaagaataagcaatggaaacaagcacataacccaagcaacattgtcaataaattatcttatacaacatttagaaaaatg |
557 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14728477 |
agatacatcattgtaatacataaagaataagcaatggaaacaatcacataacccaagcaacattgtcaataaattatcttatacaacatttagaaaaatg |
14728576 |
T |
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| Q |
558 |
aagatcataagtgagcagtaaaacatacctgaagagtatcatttgatattgtgagagatttgaca |
622 |
Q |
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| T |
14728577 |
aagatcataagtgagcagtaaaacatacctgaagagtatcatttgatattgtgagagatttgaca |
14728641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 14727994 - 14728141
Alignment:
| Q |
10 |
gacatcagcaagctcctccaaattttttgataataattccgaacagaatatgttgatctcccctaagactgtggcattttctaacaaaaactttacagct |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14727994 |
gacataagcaagctcctccaaattttttgataataattccgaacagaatatgttgatctcccctaagactgtggcattttctaacagaaactttacagct |
14728093 |
T |
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| Q |
110 |
tcgatatcaggtttaattccaagaaaatctgatatagaacatactttg |
157 |
Q |
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| T |
14728094 |
tcgatatcaggtttaattccaagaaaatctgatatagaacatactttg |
14728141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 158 - 622
Target Start/End: Complemental strand, 17595308 - 17594846
Alignment:
| Q |
158 |
tggccatccttcatccataaataagaaaaatccctacacaagaatcaataaacaagtcattgaacagaaataattttactattagctgtgaaacatggta |
257 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
17595308 |
tggccatccttcatccaagaataagaaaaatccctacacaagaatcaataaacaagtcaatgaacagaaataattttactattagccgtgaaacatggta |
17595209 |
T |
|
| Q |
258 |
gaagaagcaagatacgtgatgtaccttagaactgtgaagaacttccagattaggagtc-ttgtggaaaatgcttgctaatacgtcactggtggggtaaaa |
356 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
17595208 |
gaagaagcaagatacgtgatgtaccttagaaatgtgaagaacttccagattaggagtctttgtggaaaatgcctgctaatacttcactggtggggtaaaa |
17595109 |
T |
|
| Q |
357 |
ataccccaagggcacatcaagatgcgtcaaattgaagaacggaggcaaaagatgaagagtgtcttttgcatagttaagacactagtaagggaaacaaaaa |
456 |
Q |
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| T |
17595108 |
ataccccaagggcacatcaagatgcgtcaaattgaagaacggaggcaaaagatg-agagtgtcttttgcatagtt-agacactagtaagggaaacaaaat |
17595011 |
T |
|
| Q |
457 |
tagatacatcattgtaatacataaagaataagcaatggaaacaagcacataacccaagcaacattgtcaataaattatcttatacaacatttagaaaaat |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17595010 |
aagatacatcattgtaatacataaagaataagcaatggaaacaaccacataacccaagcaacattgtcaataaattatcttatacaacatttag-aaaat |
17594912 |
T |
|
| Q |
557 |
gaagatcataagtgagcagtaaaacatacctgaagagtatcatttgatattgtgagagatttgaca |
622 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17594911 |
gaagatcataagtgagcagtaaaacatacctgaagagtatcattggatattgtgagagatttgaca |
17594846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 17595491 - 17595344
Alignment:
| Q |
10 |
gacatcagcaagctcctccaaattttttgataataattccgaacagaatatgttgatctcccctaagactgtggcattttctaacaaaaactttacagct |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595491 |
gacatcagcaagcttctccaaattttttgataataactccgaacaggatatgttgatctcccctaagactgtggcattttctaacaaaaactttacagct |
17595392 |
T |
|
| Q |
110 |
tcgatatcaggtttaattccaagaaaatctgatatagaacatactttg |
157 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
17595391 |
tcgatatcaggttcaattccaagaaaatctgaaatagaacatactttg |
17595344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 31217804 - 31217892
Alignment:
| Q |
368 |
gcacatcaagatgcgtcaaattgaagaacggaggcaaaagatgaagagtgtcttttgcatagttaagacactagtaagggaaacaaaaa |
456 |
Q |
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|||| |||||| |||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
31217804 |
gcacttcaagacgcgtcaaattcttgaacgaaggtaaaagatgaagagcagattttgcatagttaagacactagcaagggaaacaaaaa |
31217892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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