View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6898_low_10 (Length: 210)

Name: NF6898_low_10
Description: NF6898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6898_low_10
NF6898_low_10
[»] chr7 (6 HSPs)
chr7 (19-199)||(19779760-19779940)
chr7 (19-199)||(19887443-19887623)
chr7 (19-145)||(19358122-19358248)
chr7 (19-135)||(19350831-19350947)
chr7 (20-65)||(29881560-29881605)
chr7 (20-64)||(29921726-29921770)
[»] chr3 (2 HSPs)
chr3 (19-194)||(32578594-32578769)
chr3 (19-146)||(12734540-12734667)
[»] scaffold0464 (1 HSPs)
scaffold0464 (19-199)||(8219-8399)
[»] chr6 (1 HSPs)
chr6 (19-199)||(14749531-14749711)
[»] chr2 (4 HSPs)
chr2 (19-145)||(18913286-18913409)
chr2 (18-76)||(18908537-18908595)
chr2 (45-145)||(18920519-18920616)
chr2 (20-60)||(20699224-20699264)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 19779940 - 19779760
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19779940 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcaacagatgtaatttgctctaccgtttt 19779841  T
Q  119 atctctccaattatagagaattgcatggttgtcataaccatcgtggccttgttgattgcttgccattataagtgtgatgtc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  19779840 atctctccaattatagagaattgcatggttgtcataaccatcgtggccttcttgattgcttgccattataagtgtgttgtc 19779760  T

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Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 19887443 - 19887623
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19887443 aaacttactctcaaaagattgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcaacagatgtaatttgctctaccgtttt 19887542  T
Q  119 atctctccaattatagagaattgcatggttgtcataaccatcgtggccttgttgattgcttgccattataagtgtgatgtc 199  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  19887543 atctctccagttatagataattgcatggttgtcataaccatcgtagccttgttgattgcttgccattataagtgtgttgtc 19887623  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 19358248 - 19358122
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||| |||| ||| |||||||||||||||||||||||| ||||||| ||||||| |||||| ||||| |||||||||| | ||||  ||  ||||    
T  19358248 aaacttactttcaagaggatgaaactaagctttcaacataatctttggtataaaaccaccatattttattgttgacagatgtagtatgctttactctttt 19358149  T
Q  119 atctctccaattatagagaattgcatg 145  Q
    |||||||||||||||||||||||||||    
T  19358148 atctctccaattatagagaattgcatg 19358122  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 19350831 - 19350947
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||| |||| ||||||||||||||||||||||||||| | | | |  ||||||| |||||  ||||| ||||||| |||| ||||| ||  ||||    
T  19350831 aaacttactttcaagaggttgaaactaagctttcaacataattcctagcaaaaaaccaccatattctattgttgacagatttaatatgctctactctttt 19350930  T
Q  119 atctctccaattataga 135  Q
    |||||||||||||||||    
T  19350931 atctctccaattataga 19350947  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 29881605 - 29881560
Alignment:
Q  20 aacttactctcaaaaggttgaaactaagctttcaacataatccttg 65  Q
    |||||||| ||||||  |||||||||||||||||||||||| ||||    
T  29881605 aacttactttcaaaaaattgaaactaagctttcaacataattcttg 29881560  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 29921726 - 29921770
Alignment:
Q  20 aacttactctcaaaaggttgaaactaagctttcaacataatcctt 64  Q
    |||||||| ||||||  ||| ||||||||||||||||||||||||    
T  29921726 aacttactttcaaaaaattggaactaagctttcaacataatcctt 29921770  T

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Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 32578594 - 32578769
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||    
T  32578594 aaacttactctcaaaaggttgaaaataagctttcaacataagccttggtatgaaaccacaatatttcatcgtcaacagatgtaatttgctcaaccctttt 32578693  T
Q  119 atctctccaattatagagaattgcatggttgtcataaccatcgtggccttgttgattgcttgccattataagtgtg 194  Q
    || |||||||| ||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||||||||    
T  32578694 atttctccaatcatagagaattgcatggttgtcatgaccgtcatagccttgttgattgcttgccattataagtgtg 32578769  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 12734540 - 12734667
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||| |||| |||||||||| |||| ||||||| | |||| ||||||| || ||| ||||    
T  12734540 aaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacattattacattgtcaagagatttaatttggtcaaccctttt 12734639  T
Q  119 atctctccaattatagagaattgcatgg 146  Q
    ||||||||||||||||| ||||||||||    
T  12734640 atctctccaattatagataattgcatgg 12734667  T

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Target: scaffold0464 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 8399 - 8219
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||| |||| |||||||||| |||| ||||||| | |||| |||||||||| ||| ||||    
T  8399 aaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacattattacattgtcaagagatttaatttgctcaaccctttt 8300  T
Q  119 atctctccaattatagagaattgcatggttgtcataaccatcgtggccttgttgattgcttgccattataagtgtgatgtc 199  Q
    ||||||||||||||||| |||||||||| | | || | || | | ||||||||||||||||||||||||||||||| ||||    
T  8299 atctctccaattatagataattgcatggcttttatcatcaccatagccttgttgattgcttgccattataagtgtgttgtc 8219  T

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Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 14749711 - 14749531
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||| |||| || |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||  ||||||||||||| || ||| ||||    
T  14749711 aaacttactttcaagagcttgaaattaagctttcaacaaaatccttggtataaaaccacaatatttcattgtcaccagatgtaatttgttcaaccctttt 14749612  T
Q  119 atctctccaattatagagaattgcatggttgtcataaccatcgtggccttgttgattgcttgccattataagtgtgatgtc 199  Q
    |||| |||||||||||| |||||||||| ||| || | |||| | ||||||| ||||| ||||||||||||||||| ||||    
T  14749611 atctatccaattatagataattgcatggctgttatgatcatcatagccttgtcgattgattgccattataagtgtgttgtc 14749531  T

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Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 18913286 - 18913409
Alignment:
Q  19 aaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgtttt 118  Q
    ||||||||| |||| ||||||| || |||||||||||||||| ||||||||||||||||||||| | |||||    || || ||||||||| ||  | ||    
T  18913286 aaacttactttcaagaggttgataccaagctttcaacataattcttggtatgaaaccacaatatgttattgt---tagttgcaatttgctcaactttatt 18913382  T
Q  119 atctctccaattatagagaattgcatg 145  Q
    |||||||||||||||||||||||||||    
T  18913383 atctctccaattatagagaattgcatg 18913409  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 18908537 - 18908595
Alignment:
Q  18 aaaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaacca 76  Q
    |||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||    
T  18908537 aaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaacca 18908595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 18920519 - 18920616
Alignment:
Q  45 aagctttcaacataatccttggtatgaaaccacaatatttcattgtcgacagatgtaatttgctccaccgttttatctctccaattatagagaattgcat 144  Q
    |||||||||||||||| ||| ||||||||||||| ||||| |||||    || || ||||||||| ||  | || |||||||||||||||||||||||||    
T  18920519 aagctttcaacataattctttgtatgaaaccacattatttgattgt---aagttgcaatttgctcaactttattttctctccaattatagagaattgcat 18920615  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 20699224 - 20699264
Alignment:
Q  20 aacttactctcaaaaggttgaaactaagctttcaacataat 60  Q
    |||||||| |||||| ||||||||||| |||||||||||||    
T  20699224 aacttactttcaaaaagttgaaactaaactttcaacataat 20699264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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