View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6898_low_3 (Length: 413)
Name: NF6898_low_3
Description: NF6898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6898_low_3 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 5 - 405
Target Start/End: Complemental strand, 37071533 - 37071133
Alignment:
| Q |
5 |
gcaattccaaggataagatataaaatgatcatcccagttagtagcatccctcgggatgctggagacatgaaaccaagtgctgcaaaaacaatagtaacac |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071533 |
gcaattccaaggataagatataaaatgatcatcccagttagtagcatccctcgggatgctggagacatgaaaccaagtgctgcaaaaacaatagtaacac |
37071434 |
T |
|
| Q |
105 |
ctgccattccaagaatttgaaccccatctccaaccattacacacagaagctttgagcattcaggctccctaaatacatcacctacaacaagtttccaccc |
204 |
Q |
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| T |
37071433 |
ctgccattccaagaatttgaaccccatctccaaccattacacacagaagctttgagcattcaggctccctaaatacatcacctacaacaagtttccaccc |
37071334 |
T |
|
| Q |
205 |
agaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaatgacaaaaacaatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071333 |
agaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaatgacaaaaacaatg |
37071234 |
T |
|
| Q |
305 |
ccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatcccaacgtgatgtccatc |
404 |
Q |
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| T |
37071233 |
ccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatcccaacgtgatggccatc |
37071134 |
T |
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| Q |
405 |
t |
405 |
Q |
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| T |
37071133 |
t |
37071133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 393
Target Start/End: Original strand, 43219237 - 43219625
Alignment:
| Q |
5 |
gcaattccaaggataagatataaaatgatcatcccagttagtagcatccctcgggatgctggagacatgaaaccaagtgctgcaaaaacaatagtaacac |
104 |
Q |
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||||| || |||| |||||| ||||| ||||| || |||| ||||| |||||||||||||| ||||||||||| | ||||| || ||||| ||||||| |
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| T |
43219237 |
gcaatccccaggaaaagatacaaaattatcatacctgttaacagcattcctcgggatgctggtgacatgaaacccaaggctgcgaacacaattgtaacac |
43219336 |
T |
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| Q |
105 |
ctgccattccaagaatttgaaccccatctccaaccattacacacagaagctttgagcattcaggctccctaaatacatcacctacaacaagtttccaccc |
204 |
Q |
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| T |
43219337 |
cagccatgccaagaatctgaaccccgtctccaaccatcacacaaaggagttttgagcaacctggttccctaaatacatcacccacaacaagcttccatcc |
43219436 |
T |
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| Q |
205 |
agaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaatgacaaaaacaatg |
304 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||| |
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| T |
43219437 |
agaaagctcctcattcatctgagcttgtgtctctttgtccaattcctcataccttgccaagtcccttctcactgttcttaagaaaatgacaaaaacaata |
43219536 |
T |
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| Q |
305 |
ccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatcccaacg |
393 |
Q |
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| T |
43219537 |
ccagctagaaaaaagatcaccatcagtgaatttagaatcgagaaccaatgcacccgggaaccctccatcttcaaataagcatcccaacg |
43219625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 390
Target Start/End: Complemental strand, 421 - 222
Alignment:
| Q |
191 |
acaagtttccacccagaaagctcctcgttcatctgagcttgtgcctctttgtccaattcctcataccttgtcaaatcccttcttacagttcttaagaaaa |
290 |
Q |
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||||| ||||| ||||| | |||||| |||||||| ||||| || || || || | ||||| || || | || |||||| || |||||||| ||||| | |
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| T |
421 |
acaagcttccaaccagataactcctcattcatctgtgcttgagcttccttatcaagctcctcgtaactggccagatccctcctaacagttctcaagaaga |
322 |
T |
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| Q |
291 |
tgacaaaaacaatgccagcaaggaaaataataaccatcagtgaatttaggattgagaaccaatgaactcgagaaccctccatcttcaaataagcatccca |
390 |
Q |
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| T |
321 |
taacaagaacaataccagcaaggaaagtgatcaccatcaacgaattgaggatcgagaaccaatggactttggctccctccatcttcaagtaagcatccca |
222 |
T |
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