View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6898_low_4 (Length: 375)
Name: NF6898_low_4
Description: NF6898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6898_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 1934800 - 1934448
Alignment:
| Q |
11 |
acctgtggaactttggtagattcagaataaattaagaggacaccaacatcacataaatctatttagttttatccccggtagatcaacaatgaagctatat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1934800 |
acctgtggaactttggtagattgagaataaattaagaggacaccaacatcacataaatctatttagttttatccccggtagatcaacaatgaagctatat |
1934701 |
T |
|
| Q |
111 |
atctgttacgaaaattgatggtgagatgtagatgggattaattaaacttatacatggcttttattgatgtagaaagagaataatataatgcatgagaggg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1934700 |
atctgttacgaaaattgatggtgagatgtagatgggattaattaaacttatacatggcttttattgatgtagaaagggaataatataatgtatgagaggg |
1934601 |
T |
|
| Q |
211 |
gcacagctagtgttacaacactaggtgggaatgttgaagacttcccaataactaaaggtgtgaattaagggtcagttttgagcccttatttttctatagg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1934600 |
gcacagctagtgttacaacactaggtgggaatgttgaagacttcccaataactaaaggtgtgaattaagggtcagttttgagcccttatttttctatagg |
1934501 |
T |
|
| Q |
311 |
ttctggatttgtttactgaacataggctagagaggttgtcacaggttcacagg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1934500 |
ttctggatttgtttactgaacataggctagagaggttgtcacaggttcacagg |
1934448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University