View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6898_low_5 (Length: 339)
Name: NF6898_low_5
Description: NF6898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6898_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 31112364 - 31112030
Alignment:
| Q |
1 |
tcatctcaagtatctacaatcatttaatagtattattacttgactgcaaacaattattttaaaagttgtggtcttgtaagtaaaactaaattacctcagt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31112364 |
tcatctcaagtatctacaatcatttaatagtattattacttgactgcaaacaattattttaaaagttgtggtcttgtaagtaaaattaaattacctcagt |
31112265 |
T |
|
| Q |
101 |
gtaaactattcttccaggacatagagtctgaaattcacttcgtgagcctatgagggtttcgaccttgaacaattcctcactacatgcatcaaaaacaatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31112264 |
gtaaactattcttccaggacatagagtctgaaattcacttcgtgagcctatgagggtttcaaccttgaacaattcctcactacatgcatcaaaaacaatt |
31112165 |
T |
|
| Q |
201 |
taaagttatatatgatgccattatttgtcaacatgaaatttgaaaatgattattgcctcaaaatcaataccttagatcattcttggaatgaaaaacataa |
300 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31112164 |
taaaattatatatgatgccattatttgtcaacatgaaatttgaaaatgattactgcctcaaaatcaataccttagatcattcttggaatgaaaaacataa |
31112065 |
T |
|
| Q |
301 |
catgaaacatgttcttccacaggttggagtttcat |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
31112064 |
catgaaacatgttcttccacaggttggagtttcat |
31112030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 16101010 - 16100676
Alignment:
| Q |
1 |
tcatctcaagtatctacaatcatttaatagtattattacttgactgcaaacaattattttaaaagttgtggtcttgtaagtaaaactaaattacctcagt |
100 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |
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| T |
16101010 |
tcatctgaagtatatacaatcatttaatagtattattaattgactgcaaacaattattttaaaagttgtggtcttgtaagtgaaattaaattaccttagt |
16100911 |
T |
|
| Q |
101 |
gtaaactattcttccaggacatagagtctgaaattcacttcgtgagcctatgagggtttcgaccttgaacaattcctcactacatgcatcaaaaacaatt |
200 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16100910 |
gtcaactattcttccaggacatagagtctgaaattcatttcgtgagcctatgagggtttcaaccttgaacaattcctcactacatgcatcaaaaacaatt |
16100811 |
T |
|
| Q |
201 |
taaagttatatatgatgccattatttgtcaacatgaaatttgaaaatgattattgcctcaaaatcaataccttagatcattcttggaatgaaaaacataa |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16100810 |
taaagttatatatgatgccattatttgtcaacatggaatttgaaaatgattactgcttcaaaatcaataccttagatcattcttggaatgaaaaacataa |
16100711 |
T |
|
| Q |
301 |
catgaaacatgttcttccacaggttggagtttcat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
16100710 |
catgaaacatgttcttccacaggttggagtttcat |
16100676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 10521258 - 10521574
Alignment:
| Q |
1 |
tcatctcaagtatctacaatcatttaatagtattattacttgactgcaaacaattattttaaaagttgtggtcttgtaagtaaaactaaattacctcagt |
100 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || |
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| T |
10521258 |
tcatctaaaatatctacaatcatttaatagtactattacttgactgcaaataattattttaaaagttgtggtcttgtaagt-----gaaattacatcggt |
10521352 |
T |
|
| Q |
101 |
gtaaactattcttccaggacatagagtctgaaattcacttcgtgagcctatgagggtttcgaccttgaacaattcctcactacatgcatcaaaaacaa-t |
199 |
Q |
| |
|
|| ||||||||||| |||| | | ||| |||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| | |
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| T |
10521353 |
gtcaactattcttcgaggatacaaagtttgaaattcttttcgtgagcctatgagggctttaaccttgaacaatttatcactacatgcatcaaaaacaatt |
10521452 |
T |
|
| Q |
200 |
ttaaagttatatatgatgccattatttgtcaacatgaaatttgaaaatgattattgcctcaaaatcaataccttagatcattcttggaatgaaaaacata |
299 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||| || |
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|
| T |
10521453 |
ttaaagttatatatgatgtcattatttgttaacatggaatttgaaaatgattactgctctaaaatcaataccttagatcattct--------------ta |
10521538 |
T |
|
| Q |
300 |
acatgaaacatgttcttccacaggttggagtttcat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
10521539 |
acatgaaacatgttcttccacaggttggagtttcat |
10521574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 19294804 - 19295126
Alignment:
| Q |
8 |
aagtatctacaatcatttaatagtattattacttgactgcaaacaattattttaaaagttgtggtcttgtaagtaaaactaaattacctcagtgtaaact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | || |||||| ||| |||||||||||| |||| |
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|
| T |
19294804 |
aagtatctacaatcatttaatagtattattacttgactgcaaacaattatttaaaaagttttagcctagtaagtgaaa-----ttacctcagtgtcaact |
19294898 |
T |
|
| Q |
108 |
attcttccaggaca-tagagtctgaaattcacttcgtgagcctatgagggtttcgaccttgaacaattcctcactacatgcatcaa-aaacaattt-aaa |
204 |
Q |
| |
|
|||||| ||||||| || |||||||| | || |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
19294899 |
attcttacaggacacta---tctgaaatccctttaatgagcctatgagggtttcaaccttcaacaattcctcactacatgcatcaataaacaattttaaa |
19294995 |
T |
|
| Q |
205 |
gttatatatgatgccattatttgtcaacatgaaatttgaaaatgattattgcctcaaaatcaataccttagatcattcttggaatgaaaaacataacatg |
304 |
Q |
| |
|
| |||| ||||| |||| |||||||||||| |||| |||||||||||||| |||||||||| | || ||||||||||| | || |||||||||||||| |
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|
| T |
19294996 |
gatatacctgatgtcattctttgtcaacatggaattctaaaatgattattgcttcaaaatcaacaactgagatcattcttagcattaaaaacataacatg |
19295095 |
T |
|
| Q |
305 |
aaacatgttcttccacaggttggagtttcat |
335 |
Q |
| |
|
|||||| || |||||| |||||||||||||| |
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|
| T |
19295096 |
aaacatatttttccacgggttggagtttcat |
19295126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 19294682 - 19294363
Alignment:
| Q |
11 |
tatctacaatcatttaatagtattattacttgactgcaaacaattattttaaaagttgtggtcttgtaagtaaaactaaattacctcagtgtaaactatt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||| ||| ||||||| | | ||||||| |
|
|
| T |
19294682 |
tatctacaatcatttaatagtattattacttc---gcaaacaattatttaaaaagttgtggcctaataagtgaaa-----ttacctctgcatcaactatt |
19294591 |
T |
|
| Q |
111 |
cttccaggacatagagtctgaaattcacttcgtgagcctatgagggtttcgaccttgaacaattcctcactacatgcatcaa-aaacaa-tttaaagtta |
208 |
Q |
| |
|
|||||| |||| | |||||||||||| ||| |||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||| || |
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|
| T |
19294590 |
cttccatgacacaaagtctgaaattccattcatgagcctacgagggtttcaaccttgaacaatttctcactacatgcatcaattaacaattttaaagata |
19294491 |
T |
|
| Q |
209 |
tatatgatgccattatttgtcaacatgaaatttg-aaaatgattattgcctcaaaatcaataccttagatcattcttggaatgaaaaacataacatgaaa |
307 |
Q |
| |
|
| | ||||| |||| ||| |||| || |||| | |||||||||| ||| |||||||||||| || ||||||||||| | ||||||||||| |||||||| |
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|
| T |
19294490 |
tttctgatgtcattctttatcaatgtggaattcgaaaaatgattactgcttcaaaatcaataactaagatcattcttagcatgaaaaacatgacatgaaa |
19294391 |
T |
|
| Q |
308 |
catgttcttccacaggttggagtttcat |
335 |
Q |
| |
|
|||||||||||| |||| ||| ||||| |
|
|
| T |
19294390 |
tatgttcttccacgggttcgagattcat |
19294363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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