View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6898_low_6 (Length: 294)
Name: NF6898_low_6
Description: NF6898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6898_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 90 - 276
Target Start/End: Complemental strand, 37692786 - 37692600
Alignment:
| Q |
90 |
catggctagatttgattgataataacaaataatcaacaattacaatgacaaaaatgatttggtgctttctttcctataattttgcaatgacctcctttgc |
189 |
Q |
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| T |
37692786 |
catggctagatttgattgataataacaaataatcaacaattacaatgacaaaaatgatttggtgctttctttcctataattttgcaatgacctcctttgc |
37692687 |
T |
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| Q |
190 |
cacaatggctacttctgcacttctgatcacaatttgtgttatcagtcttattacttacaaagcagcgacctatatgattgtcattac |
276 |
Q |
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| T |
37692686 |
cacaatggctacttctgcacttctgatcacaatttgtgttatcagtcttattacttacaaagcagcgacctatatgattgtcattac |
37692600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 37708764 - 37708695
Alignment:
| Q |
119 |
taatcaacaattacaatgacaaaaatgatttggtgctttctttcctataattttgcaatgacctcctttg |
188 |
Q |
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| T |
37708764 |
taatcaacaataacaatgacaaaaatgatttggtgctttccttccaataattttgcaatgacctcctttg |
37708695 |
T |
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