View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_high_1 (Length: 495)
Name: NF6899_high_1
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 41694672 - 41694371
Alignment:
| Q |
4 |
agtttcgtgttaggaggcgtaagataataagattgtgcgtatgctattgggcctttattttctaagttatgagagtcattttaggt-------------- |
89 |
Q |
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|||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41694672 |
agtttcatgttaggaggcgtaagataataagattatgcatatgctattgggcctttattttctaagttatgagagtcattttaggttttgctatataata |
41694573 |
T |
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| Q |
90 |
------aagaatatgctacgtgtttcccagtgcttgtagaaccccaagtgaatctatctaagcatctttaaacgaacnnnnnnnnncttcttcgaaatat |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
41694572 |
tcttgtaagaatatgctacgtgtttcccagtgcttgtagaaccccaagtgaatctatctaagcatctttaaacgaactctttttttcttctttgaaatat |
41694473 |
T |
|
| Q |
184 |
gattccaagtaaacaaagccttagtaagagacacaatgataatctcaaccctattgagtaccaccgagatcaaagctttcttgcccacatgcatactcgc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41694472 |
gattccaagtaaacaaagccttagtaagagacacaatgataatctcaaccctattgagtaccaccgagatcaaagctttcttgcccacatgcatactcgc |
41694373 |
T |
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| Q |
284 |
ag |
285 |
Q |
| |
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|| |
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| T |
41694372 |
ag |
41694371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 344 - 476
Target Start/End: Complemental strand, 41694312 - 41694180
Alignment:
| Q |
344 |
tcgaaaccctgctttcacttctttacccaaccccgtcatggaggacccataaaccgctctcatcatcgactattggctcataccactggagttggcctaa |
443 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41694312 |
tcgaaaccctgctttcacttctttacccaatcccgtcattgaggacccataaaccgctctcatcatcgactattggctcataccactggagttggcctaa |
41694213 |
T |
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| Q |
444 |
atcttgtcaacgaaggcccgtaaaacgctctct |
476 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
41694212 |
atcttgtcaacgaaagcccgtaaaacgctctct |
41694180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 41696161 - 41696066
Alignment:
| Q |
184 |
gattccaagtaaacaaagccttagtaagagacacaatgataatctcaaccctattgagtaccaccgagatcaaagctttcttgcccacatgcatactcgc |
283 |
Q |
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||||||||||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
41696161 |
gattccaagtaaacaaagc-ttagtaagagacacagtgctaatctcaagcctaacaagtaccaccgaaatcaaag---tcttgcccatatgcatactcgc |
41696066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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