View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_high_14 (Length: 214)
Name: NF6899_high_14
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 17093360 - 17093169
Alignment:
| Q |
11 |
catcaccagctcctacaactatgaacgtgggaaatacacaacggaaaaatccagaggcatgaatattcaagtgcaatattgagcatccttttctaagtag |
110 |
Q |
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| T |
17093360 |
catcaccagctcctacaactatgaacgtgggaaatacacaacggaaaaatccggaggcatgaatattcaagtgcaatattgagcatccttttctaagtag |
17093261 |
T |
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| Q |
111 |
tataataaagttgagatagatatgtgtataagagatgagacatgtacttttatggtagccaaaagtgaatggtttagttcaatgtgtgatgt |
202 |
Q |
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| T |
17093260 |
tataataaagttgagatacatatgtgtataagaaatgagacatgtacttttatggtagccaaaagtgaatggtttagtccaatgtgtgatgt |
17093169 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 1706025 - 1706093
Alignment:
| Q |
120 |
gttgagatagatatgtgtataagagatgagacatgtacttttatggtagccaaaagtgaatggtttagt |
188 |
Q |
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| T |
1706025 |
gttgggataggtatttgtataagagatgacacatgtgcttttgttttagctaaaattgaatggtttagt |
1706093 |
T |
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