View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_high_15 (Length: 207)
Name: NF6899_high_15
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 41386707 - 41386898
Alignment:
| Q |
7 |
aagatggtgaatttgttgaacgtgacaaaattggtgaagcaaatcttcttgaagaagacaccgttgttgttgttgatgaagatcttgttgttattgttga |
106 |
Q |
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| T |
41386707 |
aagatggtgaatttgttgaacgtgacaaaattggtgaagcaaatcttcttgaagaagacaccgttgttgttgttgatgaagatcttgttgttattgttga |
41386806 |
T |
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| Q |
107 |
agaagatcaaggtgaaggagacaagtataagaaatttgtctaccttttctcttgggtaacacaccattattgttgttattgttgttgatgtc |
198 |
Q |
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| T |
41386807 |
agaagatcaaggtgaaggagacaagtataagaaatttgtctaccttttctcctgggtaacacaccattattgttgttattgttgttgatgtc |
41386898 |
T |
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Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 37559845 - 37559648
Alignment:
| Q |
1 |
gtgttcaagatggtgaatttgttgaacgtgacaaaattggtgaagcaaatcttcttgaagaagacaccgttgttgttgttgatgaagatcttgttgttat |
100 |
Q |
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| T |
37559845 |
gtgttgaagatggttaatttgttgaacgtgacaaaattggtgaagcaaatcttcttgaagaagacaccgttgttgttgttgatgaagatcttgttgttat |
37559746 |
T |
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| Q |
101 |
tgttgaagaagatcaaggtgaaggagacaagtataagaaatttgtctaccttttctcttgggtaacacaccattattgttgttattgttgttgatgtc |
198 |
Q |
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| T |
37559745 |
tgttgaagaagatcaaggtgaaggagacaagtataagaaatttgtctaccttttctcctgggtaacacaccattattgttgttattgttgttgatgtc |
37559648 |
T |
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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48287612 - 48287675
Alignment:
| Q |
1 |
gtgttcaagatggtgaatttgttgaacgtgacaaaattggtgaagcaaatcttcttgaagaaga |
64 |
Q |
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| T |
48287612 |
gtgttgaagatgatgaattcgttgaacgtgacaaaagtggtgaagcaaatcttcttgaagaaga |
48287675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 48287752 - 48287844
Alignment:
| Q |
105 |
gaagaagatcaaggtgaaggagacaagtat----aagaaatttgtctaccttttctcttgggtaacacaccattattgttgttattgttgttg |
193 |
Q |
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| T |
48287752 |
gaagaagaagaaggtgaaggagacatgtacctagaagaaatttgtctaccttttcttctgggtaagacaccattgttattgttattgttgttg |
48287844 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 5777160 - 5777200
Alignment:
| Q |
69 |
gttgttgttgttgatgaagatcttgttgttattgttgaaga |
109 |
Q |
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| T |
5777160 |
gttgttgttgttgatgaagaaattgttgttgttgttgaaga |
5777200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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