View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_high_5 (Length: 305)
Name: NF6899_high_5
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 2588415 - 2588688
Alignment:
| Q |
20 |
tattgctagacgttcgaggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatgaagaaagattggcaagagaa |
119 |
Q |
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| T |
2588415 |
tattgctagacgttcgaggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatgaagaaagattggcaagagaa |
2588514 |
T |
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| Q |
120 |
atgtatcctgaatcattcttaaattcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgagcacaatc |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588515 |
atgtatcctgaatcattcttaaaatcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgagcacaatc |
2588614 |
T |
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| Q |
220 |
taggaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
293 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588615 |
tagaaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
2588688 |
T |
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