View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_10 (Length: 433)
Name: NF6899_low_10
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 13775842 - 13776253
Alignment:
| Q |
1 |
tataagaatttctaggtgttgacatatcctctggtctttgccaacattgatgatctgaatcaggatcaccaatttctccatacaaaacatttggttgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13775842 |
tataagaatttctaggtgttgacatatcctctggtctttgccaacattgatgatctgaatcaggatcaccaatttctccatacaaaacatttggttgttg |
13775941 |
T |
|
| Q |
101 |
atgtgctttcatcaagtagtctgttccccattttatggctgctaatgcatttgtaagctcattcttttttccaagttggtctttgaactctattgtgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13775942 |
atgtgctttcatcaagtagtctgttccccattttatggctgctaatgcatttgtaagctcattcttttttccaagttggtctttaaactctattgtgctc |
13776041 |
T |
|
| Q |
201 |
catgatagcattgttgttgtaaatgccattggaaaacctagcttcaaattgtctccagcatcataatatcctccaactaggtcaatctgcacatgtatat |
300 |
Q |
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| T |
13776042 |
catgatagcattgttgttgtaaatgccattggaaaacctagcttcaaattgtctccagcatcataatatcctccaactaggtcaatctgcacatgtatat |
13776141 |
T |
|
| Q |
301 |
aacatttataattcgtctaaatttatgtatagtagcttgtatttcaatttgttttggtgacttagggtatctcttgatatattagattcatttaaggtaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13776142 |
aacatttataattcgtctaaatttatgtatagtaacttgtatttcaatttgttttggtgacttagggtatctcttgatatattagattcatttaaggcaa |
13776241 |
T |
|
| Q |
401 |
tgatctctccct |
412 |
Q |
| |
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|||||||||||| |
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| T |
13776242 |
tgatctctccct |
13776253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 13765226 - 13765510
Alignment:
| Q |
1 |
tataagaatttctaggtgttgacatatcctctggtctttgccaacattgatgatctgaatcaggatcaccaatttctccatacaaaacatttggttgttg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |
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| T |
13765226 |
tatacgaatttctaggtgttgacatatcctctggtctttgccaacattgatgatctgaatcaggatcaccaacttctccatacaaaatgtttggttgtgg |
13765325 |
T |
|
| Q |
101 |
atgtgctttcatcaagtagtctgttccccattttatggctgctaatgcatttgtaagctcattcttttttccaagttggtctttgaactctattgtgctc |
200 |
Q |
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|||||| ||||||||||| |||| ||||||||||||||||| |||||||||| || |||||| ||||| |||||| ||| |||||||||||||||||| |
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| T |
13765326 |
atgtgccttcatcaagtaatctgctccccattttatggctgataatgcatttttatactcattggttttttcaagtttgtccttgaactctattgtgctc |
13765425 |
T |
|
| Q |
201 |
catgatagcattgttgttgtaaatgccattggaaaacctagcttcaaattgtctccagcatcataatatcctccaactaggtcaa |
285 |
Q |
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||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
13765426 |
catgatagcattgttatggtaaatgccattggaaatcctaacttcaaattgtctccagcatcatagtatccacccactaggtcaa |
13765510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 39419551 - 39419630
Alignment:
| Q |
198 |
ctccatgatagcattgttgttgtaaatgccattggaaaacctagcttcaaattgtctccagcatcataatatcctccaac |
277 |
Q |
| |
|
|||||||| ||||| || || ||||| ||||| |||||||| | ||| | |||||| |||||||||||||| |||||||| |
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| T |
39419551 |
ctccatgaaagcatagtggtagtaaaagccataggaaaaccaaacttgacattgtcaccagcatcataataccctccaac |
39419630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 2413427 - 2413509
Alignment:
| Q |
192 |
attgtgctccatgatagcattgttgttgtaaatgccattggaaaacctagcttcaaattgtctccagcatcataatatcctcc |
274 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| | || | ||||||||| ||||||||||| ||||| |
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| T |
2413427 |
attgtgctccatgatagcattgttgttgtgaatgccattggaaaattgaatttaacattgtctcctgcatcataatagcctcc |
2413509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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