View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_11 (Length: 414)
Name: NF6899_low_11
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 48436578 - 48436960
Alignment:
| Q |
18 |
aacacaacagtgatgatggccatgtaagatccaagaacaattccagtagcaaagatttctttaagcttccatgaatcaggaactggtgatggctttactc |
117 |
Q |
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| T |
48436578 |
aacacaacagtgataatggccatgtaagatccaagaacaattccagtagcaaagatttctttaagcttccatgaatcaggaactagtgatggctttactc |
48436677 |
T |
|
| Q |
118 |
tatccttagagatggtcatgatggttccatcgttcaagacggcaatgatgaggaccatgaatggtgagaagtcaaacttccatatcaaagctacaagcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48436678 |
tatccttagagatggtcatgatggttccatcgttcaagacggcaatgatgaggaccatgaatggtgagaagtcaaacttccatatcaaagctacaagcat |
48436777 |
T |
|
| Q |
218 |
gaatccaaaaacaatacggatggtgatagaaacagcatagattgtgtagtttttcatcctttggaagatggctctgctagttaacaccgcactcacaatc |
317 |
Q |
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| T |
48436778 |
gaatccaaaaacaatacggatggtgatagaaacagcatagattgtgtagtttttcatcctttggaagatggctctgctagttaacaccgcactcacaatc |
48436877 |
T |
|
| Q |
318 |
acacttagtcctggctctgtcaaaacaatgtcagaagcacttcttgcagcatcagttgcatcgtcaactgcaatactgatgtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48436878 |
acacttagtcctggctctgtcaaaacaatgtcagaagcacttcttgcagcatcagttgcatcgtcaactgcaataccgatgtc |
48436960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 53075357 - 53075475
Alignment:
| Q |
261 |
gtgtagtttttcatcctttggaagatggctctgctagttaacaccgcactcacaatcacacttagtcctggctctgtcaaaacaatgtcagaagcacttc |
360 |
Q |
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| T |
53075357 |
gtgtagtttttcattctttgaaaaatagctctactagttaagactgcactgatgataacactcaatccaggttctgtcaagacaatgtcagaagcacctc |
53075456 |
T |
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| Q |
361 |
ttgcagcatcagttgcatc |
379 |
Q |
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|||||||||| || ||||| |
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| T |
53075457 |
ttgcagcatctgtagcatc |
53075475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 53074841 - 53074873
Alignment:
| Q |
47 |
tccaagaacaattccagtagcaaagatttcttt |
79 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
53074841 |
tccaagaacaattccagtagcaaatatttcttt |
53074873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 25 - 393
Target Start/End: Original strand, 21980182 - 21980550
Alignment:
| Q |
25 |
cagtgatgatggccatgtaagatccaagaacaattccagtagcaaagatttctttaagcttccatgaatcaggaactggtgatggctttactctatcctt |
124 |
Q |
| |
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|||| ||||||||||| || | ||||||||||| ||| || || ||||||||||| |||||||||||||| ||||| || |||||||| || || ||||| |
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| T |
21980182 |
cagtcatgatggccatatatgttccaagaacaactcctgttgcgaagatttctttgagcttccatgaatcgggaacaggagatggcttcaccctgtcctt |
21980281 |
T |
|
| Q |
125 |
agagatggtcatgatggttccatcgttcaagacggcaatgatgaggaccatgaatggtgagaagtcaaacttccatatcaaagctacaagcatgaatcca |
224 |
Q |
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||||||||||||||||||||||| ||||| | ||| ||||| | |||||||| || ||||| ||||||||||| || | ||| ||||||||||| ||| |
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| T |
21980282 |
ggagatggtcatgatggttccatcattcaaaatggcgatgatcaaaaccatgaaaggggagaaatcaaacttccaaattagagcaacaagcatgaaccca |
21980381 |
T |
|
| Q |
225 |
aaaacaatacggatggtgatagaaacagcatagattgtgtagtttttcatcctttggaagatggctctgctagttaacaccgcactcacaatcacactta |
324 |
Q |
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| |||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || || || ||||| ||||||||||||||||| | |
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| T |
21980382 |
agaacaatacggattgtgatggaaacagcatagattgtgtagttcttcatcctctggaagatggccctacttgtcaacacagcactcacaatcacactca |
21980481 |
T |
|
| Q |
325 |
gtcctggctctgtcaaaacaatgtcagaagcacttcttgcagcatcagttgcatcgtcaactgcaatac |
393 |
Q |
| |
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|| ||||| ||||| |||||||| || ||||| ||||| |||||||||||||| |||| ||||||| |
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| T |
21980482 |
aacccggctcagtcaagacaatgtctgaggcactccttgcggcatcagttgcatcagcaacagcaatac |
21980550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 379
Target Start/End: Original strand, 45197115 - 45197428
Alignment:
| Q |
66 |
gcaaagatttctttaagcttccatgaatcaggaactggtgatggctttactctatccttagagatggtcatgatggttccatcgttcaagacggcaatga |
165 |
Q |
| |
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||||| ||||| || | |||||||||||| || | || |||||||||||||||||||| || ||||||||||| || ||||| || | | |||||||| |
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| T |
45197115 |
gcaaaaatttccttcaacttccatgaatctggcataggagatggctttactctatccttcgaaatggtcatgatagtaccatcattaagtatggcaatga |
45197214 |
T |
|
| Q |
166 |
tgaggaccatgaatggtgagaagtcaaacttccatatcaaagctacaagcatgaatccaaaaacaatacggatggtgatagaaacagcatagattgtgta |
265 |
Q |
| |
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| | ||||| || || ||||| ||||| ||||| || | ||| | ||||| || |||| ||||| ||||| || || ||||| || || |||||||| |
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| T |
45197215 |
tcaaaaccataaaaggagagaaatcaaatttccaaattagagcaaggagcataaagccaagcacaattcggattgttatggaaactgcgtatattgtgta |
45197314 |
T |
|
| Q |
266 |
gtttttcatcctttggaagatggctctgctagttaacaccgcactcacaatcacacttagtcctggctctgtcaaaacaatgtcagaagcacttcttgca |
365 |
Q |
| |
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||| ||||| ||||| || || || ||||| || | || ||||||||||| ||||| | ||| |||||||| | || |||||||| |||| || || |
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| T |
45197315 |
gttcttcattctttgaaaaatagccctgcttgtgaggactgcactcacaataacactcaatccaggctctgtgaggactatgtcagatgcacctcgagct |
45197414 |
T |
|
| Q |
366 |
gcatcagttgcatc |
379 |
Q |
| |
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|||||||||||||| |
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| T |
45197415 |
gcatcagttgcatc |
45197428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 379
Target Start/End: Complemental strand, 48664713 - 48664601
Alignment:
| Q |
267 |
tttttcatcctttggaagatggctctgctagttaacaccgcactcacaatcacacttagtcctggctctgtcaaaacaatgtcagaagcacttcttgcag |
366 |
Q |
| |
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|||||||||||||| || || |||| |||||||||||| || || | ||| ||||||| || ||||| || || || || |||| |||||||||||| | |
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| T |
48664713 |
tttttcatcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcgg |
48664614 |
T |
|
| Q |
367 |
catcagttgcatc |
379 |
Q |
| |
|
|||| || ||||| |
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|
| T |
48664613 |
catctgtagcatc |
48664601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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