View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_13 (Length: 389)
Name: NF6899_low_13
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 3462135 - 3462494
Alignment:
| Q |
18 |
atgaataacacgtgctttatgcttcaccgccgccactgagttctcaccaccacaggcagctgataaatgtgccatatgaatccccttccccaccggaaga |
117 |
Q |
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| T |
3462135 |
atgaataacacgtgctttatgcttcaccgccgccactgagtactcaccaccaccggcagctgataaatgtgccatatgaatccccttccccaccggaaga |
3462234 |
T |
|
| Q |
118 |
aacaccgacttaacaagtcctcgcgagcccctcgccaccacgctccgccacatataaccagaatccatcttagaaataaaattagcattcttacatatca |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3462235 |
aacaccgacttaacaagtcttcgcgagcccctcgccaccacgctccgccacatataaccagaatccatcttagaaataaaattagcattcttacatatca |
3462334 |
T |
|
| Q |
218 |
atacagcacctttaccactcaactttgctaacctcaacactcttgtaaaatcttttctccgagaatcaacaaccaagaaatctagtccgatcaaaccatc |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3462335 |
atacagaacctttaccactcaactttgctaacctcaacactctagtaaaatcttttctccgagaatcaacaaccaagaaatctattccgatcaaaccatc |
3462434 |
T |
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| Q |
318 |
catcacttcctccggttctcctaccaaaacctccggtgacataccagcttctaacatatt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3462435 |
catcacttcctccggttctcctaccaaaacctccggtgacataccagcttctaacatatt |
3462494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 34 - 369
Target Start/End: Original strand, 3452132 - 3452464
Alignment:
| Q |
34 |
ttatgcttcaccgccgccactgagttctcaccaccacaggcagctgataaatgtgccatatgaatccccttccccaccggaagaaacaccgacttaacaa |
133 |
Q |
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|||||||||| ||||| || ||||| || |||||| ||||| || || |||||||||||||| |||||||||||||||||||| ||||| ||||| |
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| T |
3452132 |
ttatgcttcatggccgcaacagagttgtcgccacca---gcagccgagaagtgtgccatatgaattcccttccccaccggaagaaataccgatcgaacaa |
3452228 |
T |
|
| Q |
134 |
gtcctcgcgagcccctcgccaccacgctccgccacatataaccagaatccatcttagaaataaaattagcattcttacatatcaatacagcacctttacc |
233 |
Q |
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||| || || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
3452229 |
gtcgccgtgatccccgcgccaccacgctccgccatatataaccagaatccatcttagaaataaaattagcatttttacatatcaacacagcacctttacc |
3452328 |
T |
|
| Q |
234 |
actcaactttgctaacctcaacactcttgtaaaatcttttctccgagaatcaacaaccaagaaatctagtccgatcaaaccatccatcacttcctccggt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||| || ||| |
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| T |
3452329 |
actcaactttgctaacctcaacactcttgtaaaatcctttctccgagaatcaacaaccaagaaatctattcctactaaaccatccataacttcttctggt |
3452428 |
T |
|
| Q |
334 |
tctcctaccaaaacctccggtgacataccagcttct |
369 |
Q |
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||||| || | || |||||| ||||||||||||||| |
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| T |
3452429 |
tctccaactataatctccggcgacataccagcttct |
3452464 |
T |
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