View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_14 (Length: 375)
Name: NF6899_low_14
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 7818195 - 7818547
Alignment:
| Q |
21 |
aaggcaaaacatattttgttaaacttatttaacacctcatattctcttatctcttaattatttcccatcacatcacaaatttatcatacttattacatat |
120 |
Q |
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| T |
7818195 |
aaggcaaaacatattttgttaaacttatttaacacctcatattctcttatctcttaattatttcccatcacatcacaaatttatcatacttatcacatat |
7818294 |
T |
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| Q |
121 |
ttttctatatgtatttctctctcaaggtatatacactcacataatgcatattcatccttaggataatattgttgtggaagacaaaatgtagaaaaggtgg |
220 |
Q |
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| T |
7818295 |
ttttctatatgtatttctctctcaaggtatataccctcacataatgcatattcatccttaggataatattgttgtggaagacaaaatgtagaaaaggtgg |
7818394 |
T |
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| Q |
221 |
aacggtcgattcaatctttgatgtgtgaaattctttgtacaaaaagacctatat-----ttgggtttttcccaatacaattctctccaatccgttcac-- |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
7818395 |
aacggtcgattcaatctttgatgtgtgaaattctttgtacaaaaagacctatattagacttaggtttttcccaatacaattctctccaatccgttcacaa |
7818494 |
T |
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| Q |
314 |
--aagaatcactgagaaagaactttattatcatttctcttttatgtatgatgt |
364 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7818495 |
gaaagaatcagtgagaaagaactttattatcgtttctcttttatgtatgatgt |
7818547 |
T |
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