View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_15 (Length: 333)
Name: NF6899_low_15
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_15 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 13879367 - 13879675
Alignment:
| Q |
1 |
atgaacaatgacatcatcatcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggcttta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879367 |
atgaacaatgacatcatcatcttcatcttcgtcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggcttta |
13879466 |
T |
|
| Q |
101 |
gtgttaacaaagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879467 |
gtgttaacaaagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaa |
13879566 |
T |
|
| Q |
201 |
cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879567 |
cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatc |
13879666 |
T |
|
| Q |
301 |
atcatcatc |
309 |
Q |
| |
|
||||||||| |
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| T |
13879667 |
atcatcatc |
13879675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 13875167 - 13875448
Alignment:
| Q |
18 |
catcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgca |
117 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
13875167 |
catcatcatcttcatcttcttccttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaa |
13875266 |
T |
|
| Q |
118 |
gtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctct |
217 |
Q |
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|||||||||||||||| ||||| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13875267 |
atgcttccctttcaagtcgagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctct |
13875366 |
T |
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| Q |
218 |
tccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagat |
299 |
Q |
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|||||||||||||||| ||||| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| |
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| T |
13875367 |
tccttcctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagat |
13875448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 4879 - 4851
Alignment:
| Q |
14 |
tcatcatcttcatcttcatcttcttcctt |
42 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
4879 |
tcatcatcttcatcttcatcttcttcctt |
4851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 42827129 - 42827157
Alignment:
| Q |
14 |
tcatcatcttcatcttcatcttcttcctt |
42 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42827129 |
tcatcatcttcatcttcatcttcttcctt |
42827157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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