View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6899_low_17 (Length: 318)
Name: NF6899_low_17
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 46846767 - 46846641
Alignment:
| Q |
177 |
cccatcagttgttttggtaatttggagttcgtctgtgaaataagtataacatgacaaaaaattgttacagatgaatcaaactcaaattcttataaacaat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46846767 |
cccatcagttgttttggtaatttggagttcgtatgtaaaataagtataacatgacaaaaaattgttacaaatgaatcaaactcaaattcttataaacaat |
46846668 |
T |
|
| Q |
277 |
ttgtctcggtgaccaatgcatgatgtc |
303 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
46846667 |
ttgtctcggtgaccaatgcatgttgtc |
46846641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 46847524 - 46847419
Alignment:
| Q |
18 |
ataaagagcattaaatagaatctatttagtacaacaataacatgatacataattct-aaaatagaaaataaaaataatgcattgaatgtaaataggtaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
46847524 |
ataaagagcattaaatagaatctatttagtacaacaataacatgatacataattctaaaaatagaaaataaaaataatacattgaatgtaaatgggtaac |
46847425 |
T |
|
| Q |
117 |
aaaggt |
122 |
Q |
| |
|
|||||| |
|
|
| T |
46847424 |
aaaggt |
46847419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 46847356 - 46847322
Alignment:
| Q |
117 |
aaaggtgtgagaaaccgtatctagtagtataaaga |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46847356 |
aaaggtgtgagaaaccgtatctagtagtataaaga |
46847322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University