View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6899_low_18 (Length: 310)

Name: NF6899_low_18
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6899_low_18
NF6899_low_18
[»] scaffold0159 (2 HSPs)
scaffold0159 (8-306)||(33194-33492)
scaffold0159 (49-133)||(31576-31660)
[»] chr2 (26 HSPs)
chr2 (8-306)||(5788821-5789119)
chr2 (8-306)||(3395400-3395698)
chr2 (8-143)||(36720068-36720205)
chr2 (56-156)||(29651760-29651860)
chr2 (36-134)||(29977336-29977436)
chr2 (13-159)||(34425545-34425692)
chr2 (63-146)||(36729280-36729363)
chr2 (52-146)||(19040696-19040789)
chr2 (17-96)||(41754117-41754198)
chr2 (13-125)||(24967965-24968078)
chr2 (52-146)||(39839082-39839175)
chr2 (218-306)||(41754533-41754620)
chr2 (30-139)||(38796791-38796902)
chr2 (49-132)||(36727624-36727707)
chr2 (55-133)||(20106660-20106738)
chr2 (107-156)||(40599682-40599731)
chr2 (56-156)||(45659829-45659927)
chr2 (53-121)||(19994423-19994490)
chr2 (30-131)||(41753978-41754081)
chr2 (6-304)||(6465994-6466287)
chr2 (49-87)||(31967092-31967130)
chr2 (30-80)||(12454015-12454067)
chr2 (49-102)||(14903541-14903594)
chr2 (49-133)||(5787203-5787287)
chr2 (4-133)||(31963646-31963777)
chr2 (49-133)||(39403820-39403904)
[»] chr4 (37 HSPs)
chr4 (8-306)||(13228533-13228830)
chr4 (54-307)||(49953018-49953272)
chr4 (50-307)||(39974683-39974941)
chr4 (4-242)||(281823-282059)
chr4 (23-193)||(11559461-11559631)
chr4 (49-162)||(6554517-6554630)
chr4 (13-157)||(17675240-17675385)
chr4 (81-177)||(28475656-28475752)
chr4 (65-161)||(50158172-50158268)
chr4 (218-306)||(50814634-50814721)
chr4 (55-156)||(6560964-6561065)
chr4 (62-177)||(55050004-55050117)
chr4 (65-144)||(24183432-24183510)
chr4 (58-133)||(36697769-36697844)
chr4 (62-195)||(26289997-26290128)
chr4 (49-138)||(314323-314412)
chr4 (52-133)||(35695054-35695134)
chr4 (6-178)||(42757527-42757698)
chr4 (49-132)||(42729464-42729545)
chr4 (63-131)||(56340282-56340350)
chr4 (6-162)||(42756767-42756925)
chr4 (55-133)||(316508-316586)
chr4 (55-133)||(13918248-13918326)
chr4 (55-156)||(11560199-11560299)
chr4 (25-99)||(14266234-14266310)
chr4 (107-156)||(52543045-52543094)
chr4 (6-159)||(22681165-22681319)
chr4 (30-80)||(9694408-9694459)
chr4 (55-90)||(39977246-39977281)
chr4 (70-137)||(48683181-48683248)
chr4 (49-87)||(313117-313155)
chr4 (49-87)||(6553334-6553372)
chr4 (76-137)||(4237132-4237193)
chr4 (55-159)||(13230882-13230986)
chr4 (76-156)||(13668194-13668274)
chr4 (76-156)||(13681051-13681131)
chr4 (107-155)||(13919329-13919377)
[»] chr5 (17 HSPs)
chr5 (6-306)||(38015878-38016177)
chr5 (55-156)||(9012711-9012812)
chr5 (49-138)||(9024952-9025041)
chr5 (184-307)||(33014000-33014122)
chr5 (6-137)||(33013852-33013981)
chr5 (13-131)||(27594522-27594641)
chr5 (49-135)||(20966121-20966207)
chr5 (62-195)||(8128432-8128563)
chr5 (49-135)||(19910596-19910682)
chr5 (18-195)||(29865827-29866004)
chr5 (62-159)||(4062136-4062231)
chr5 (13-137)||(19320306-19320433)
chr5 (13-125)||(10175893-10176006)
chr5 (62-159)||(7332935-7333030)
chr5 (91-157)||(11770399-11770465)
chr5 (107-156)||(33009855-33009903)
chr5 (107-139)||(2260855-2260887)
[»] chr8 (46 HSPs)
chr8 (17-307)||(42797242-42797532)
chr8 (17-306)||(23141752-23142042)
chr8 (17-306)||(13756376-13756666)
chr8 (8-163)||(10901390-10901547)
chr8 (50-307)||(21588824-21589082)
chr8 (8-162)||(30254504-30254663)
chr8 (49-159)||(45247765-45247875)
chr8 (27-159)||(23686598-23686732)
chr8 (49-159)||(40885741-40885851)
chr8 (49-158)||(23683105-23683214)
chr8 (23-193)||(38290486-38290658)
chr8 (4-156)||(13758881-13759030)
chr8 (62-195)||(16313248-16313379)
chr8 (55-133)||(17888052-17888130)
chr8 (62-195)||(34800772-34800903)
chr8 (49-162)||(41527027-41527140)
chr8 (49-156)||(367212-367319)
chr8 (6-133)||(19263304-19263432)
chr8 (49-102)||(357546-357599)
chr8 (31-137)||(16220246-16220354)
chr8 (63-195)||(16250039-16250169)
chr8 (53-133)||(26622857-26622938)
chr8 (62-178)||(37251164-37251278)
chr8 (107-159)||(40260477-40260529)
chr8 (55-133)||(8358803-8358881)
chr8 (49-90)||(13758078-13758119)
chr8 (55-156)||(15342301-15342402)
chr8 (55-156)||(15431366-15431467)
chr8 (55-156)||(15522670-15522771)
chr8 (105-161)||(8357693-8357749)
chr8 (30-131)||(42797103-42797206)
chr8 (64-131)||(17871244-17871311)
chr8 (69-132)||(18953362-18953425)
chr8 (55-90)||(21586497-21586532)
chr8 (107-178)||(23525197-23525268)
chr8 (23-79)||(45528252-45528310)
chr8 (66-184)||(14374999-14375117)
chr8 (124-158)||(14376132-14376166)
chr8 (107-197)||(35226668-35226758)
chr8 (90-143)||(758098-758151)
chr8 (109-158)||(5685867-5685916)
chr8 (50-79)||(41787087-41787116)
chr8 (13-85)||(45245034-45245107)
chr8 (30-86)||(4072889-4072945)
chr8 (30-131)||(23141613-23141716)
chr8 (34-87)||(45527334-45527389)
[»] chr1 (28 HSPs)
chr1 (8-306)||(43387047-43387344)
chr1 (50-187)||(22636310-22636447)
chr1 (23-157)||(47783134-47783270)
chr1 (49-146)||(20306724-20306820)
chr1 (52-146)||(40946518-40946611)
chr1 (52-146)||(1992421-1992514)
chr1 (62-195)||(17006492-17006623)
chr1 (49-159)||(22541885-22541995)
chr1 (52-146)||(30001736-30001829)
chr1 (54-159)||(15524702-15524807)
chr1 (51-128)||(21469816-21469893)
chr1 (62-178)||(34159485-34159599)
chr1 (31-160)||(49879097-49879228)
chr1 (13-159)||(7844572-7844719)
chr1 (49-128)||(19065744-19065823)
chr1 (49-128)||(19113634-19113713)
chr1 (49-128)||(22538395-22538474)
chr1 (107-177)||(3838181-3838251)
chr1 (49-135)||(43385111-43385197)
chr1 (80-177)||(8313411-8313508)
chr1 (65-133)||(3981637-3981705)
chr1 (107-138)||(3982729-3982760)
chr1 (49-87)||(45919473-45919511)
chr1 (49-87)||(49880577-49880615)
chr1 (83-144)||(16851963-16852024)
chr1 (27-97)||(19098995-19099067)
chr1 (55-152)||(43385727-43385824)
chr1 (13-117)||(26531519-26531623)
[»] chr6 (28 HSPs)
chr6 (21-282)||(1599546-1599808)
chr6 (87-301)||(26894748-26894961)
chr6 (16-209)||(29214239-29214433)
chr6 (49-131)||(31737206-31737288)
chr6 (29-187)||(2976645-2976805)
chr6 (49-128)||(33350293-33350372)
chr6 (52-146)||(7428479-7428572)
chr6 (4-137)||(11554334-11554469)
chr6 (49-128)||(21984182-21984261)
chr6 (49-159)||(21988808-21988918)
chr6 (62-178)||(23410088-23410202)
chr6 (4-137)||(4852809-4852944)
chr6 (55-157)||(4031518-4031618)
chr6 (55-133)||(15878847-15878925)
chr6 (52-146)||(16279074-16279167)
chr6 (13-132)||(24175021-24175141)
chr6 (62-178)||(20872442-20872556)
chr6 (49-156)||(19660319-19660426)
chr6 (8-88)||(24397965-24398047)
chr6 (31-138)||(9449581-9449690)
chr6 (16-52)||(26894975-26895011)
chr6 (49-146)||(26597589-26597684)
chr6 (84-146)||(28365724-28365786)
chr6 (49-86)||(4851983-4852020)
chr6 (49-86)||(11555259-11555296)
chr6 (107-156)||(27436867-27436916)
chr6 (30-131)||(1599848-1599951)
chr6 (107-159)||(20874179-20874231)
[»] scaffold0036 (1 HSPs)
scaffold0036 (6-261)||(50164-50421)
[»] chr3 (33 HSPs)
chr3 (17-160)||(50331915-50332060)
chr3 (50-307)||(36095949-36096207)
chr3 (194-306)||(50332062-50332173)
chr3 (13-159)||(40056502-40056649)
chr3 (49-146)||(20934988-20935084)
chr3 (165-307)||(12746101-12746241)
chr3 (49-135)||(14044290-14044376)
chr3 (49-146)||(17764120-17764216)
chr3 (49-146)||(19065440-19065536)
chr3 (49-158)||(30171174-30171283)
chr3 (49-146)||(32976462-32976558)
chr3 (62-195)||(19817404-19817535)
chr3 (55-133)||(20779566-20779644)
chr3 (52-146)||(42400377-42400470)
chr3 (26-99)||(10020152-10020227)
chr3 (37-134)||(25225304-25225403)
chr3 (49-128)||(20788453-20788532)
chr3 (37-137)||(52753015-52753117)
chr3 (18-131)||(39183069-39183183)
chr3 (49-159)||(39187291-39187401)
chr3 (54-159)||(30169901-30170006)
chr3 (67-145)||(431968-432046)
chr3 (38-133)||(32970436-32970533)
chr3 (31-138)||(34849788-34849897)
chr3 (57-138)||(2250975-2251056)
chr3 (57-138)||(14045389-14045470)
chr3 (30-156)||(9611703-9611832)
chr3 (49-133)||(50241485-50241569)
chr3 (49-143)||(6087838-6087930)
chr3 (55-90)||(12744020-12744055)
chr3 (8-86)||(37835402-37835479)
chr3 (6-80)||(50413-50489)
chr3 (115-156)||(44904856-44904897)
[»] scaffold0380 (2 HSPs)
scaffold0380 (4-127)||(14522-14647)
scaffold0380 (168-299)||(14373-14503)
[»] scaffold0024 (2 HSPs)
scaffold0024 (13-176)||(47112-47277)
scaffold0024 (59-122)||(41449-41512)
[»] chr7 (20 HSPs)
chr7 (14-177)||(38788897-38789060)
chr7 (36-157)||(2452101-2452221)
chr7 (49-146)||(43989681-43989777)
chr7 (76-214)||(17510236-17510374)
chr7 (76-214)||(17542840-17542978)
chr7 (13-195)||(29912532-29912714)
chr7 (60-152)||(4120006-4120098)
chr7 (16-133)||(6677088-6677207)
chr7 (105-157)||(45406685-45406737)
chr7 (76-214)||(17474752-17474890)
chr7 (76-214)||(17578324-17578462)
chr7 (56-144)||(42078960-42079050)
chr7 (32-92)||(2927976-2928038)
chr7 (56-133)||(4110362-4110437)
chr7 (63-129)||(24708451-24708517)
chr7 (52-90)||(26374611-26374649)
chr7 (109-158)||(15464394-15464443)
chr7 (55-100)||(45610345-45610390)
chr7 (109-157)||(5785971-5786019)
chr7 (14-157)||(20181326-20181468)
[»] scaffold0216 (1 HSPs)
scaffold0216 (56-156)||(29168-29268)
[»] scaffold0051 (1 HSPs)
scaffold0051 (24-138)||(12571-12687)
[»] scaffold1345 (1 HSPs)
scaffold1345 (50-146)||(1847-1942)
[»] scaffold0074 (1 HSPs)
scaffold0074 (8-165)||(30812-30970)
[»] scaffold0284 (4 HSPs)
scaffold0284 (55-137)||(6424-6506)
scaffold0284 (49-138)||(826-915)
scaffold0284 (4-133)||(7537-7668)
scaffold0284 (49-87)||(2091-2129)
[»] scaffold1750 (1 HSPs)
scaffold1750 (53-146)||(279-371)
[»] scaffold0191 (1 HSPs)
scaffold0191 (65-162)||(5137-5233)
[»] scaffold0169 (1 HSPs)
scaffold0169 (50-194)||(2229-2376)
[»] scaffold0114 (3 HSPs)
scaffold0114 (49-162)||(37016-37129)
scaffold0114 (49-87)||(35454-35492)
scaffold0114 (49-130)||(1376-1457)
[»] scaffold0012 (1 HSPs)
scaffold0012 (62-178)||(31023-31137)
[»] scaffold1743 (1 HSPs)
scaffold1743 (6-133)||(188-316)
[»] scaffold0377 (1 HSPs)
scaffold0377 (56-154)||(12554-12654)
[»] scaffold0211 (2 HSPs)
scaffold0211 (49-138)||(18450-18539)
scaffold0211 (49-87)||(19707-19745)
[»] scaffold0268 (1 HSPs)
scaffold0268 (62-178)||(19862-19976)
[»] scaffold0061 (1 HSPs)
scaffold0061 (23-74)||(45618-45671)
[»] scaffold0017 (1 HSPs)
scaffold0017 (23-74)||(153116-153169)
[»] scaffold0021 (1 HSPs)
scaffold0021 (58-155)||(128292-128389)
[»] scaffold0003 (1 HSPs)
scaffold0003 (107-156)||(50446-50495)
[»] scaffold1819 (1 HSPs)
scaffold1819 (36-80)||(179-223)
[»] scaffold1737 (1 HSPs)
scaffold1737 (107-159)||(510-562)
[»] scaffold1104 (1 HSPs)
scaffold1104 (36-80)||(1701-1745)
[»] scaffold0155 (1 HSPs)
scaffold0155 (241-300)||(22749-22806)


Alignment Details
Target: scaffold0159 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 33194 - 33492
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33194 agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 33293  T
Q  108 ttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttg 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33294 ttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttg 33393  T
Q  208 aagcgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 306  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  33394 aagcgggtatgatatcaacattgagacttatggggagccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt 33492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 31576 - 31660
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||| |||||||||  |||||||| |||||||||||||||| |||  | |||  || ||||||||| || ||||| ||||||||    
T  31576 atatgggtcatctcatgtatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacat 31660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 5788821 - 5789119
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5788821 agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 5788920  T
Q  108 ttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttg 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5788921 ttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttg 5789020  T
Q  208 aagcgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 306  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  5789021 aagcgggtatgatatcaacattgagacttatggggagccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt 5789119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 3395400 - 3395698
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  3395400 agattgacatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgtta 3395499  T
Q  106 ttttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgt 205  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||  ||||||||  ||| |||||||||||    
T  3395500 ttttaactcacacctgacacattaacatctctccattaagtatgagactctttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgt 3395599  T
Q  206 tgaagcgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatg 305  Q
    |||||||| || ||||||| |||||  |||||||||||| ||||||||||||||||  |||||| |||||||||||| |||||||||||||| |||||||    
T  3395600 tgaagcggatatgatatcaccattggaacttatggggagacaacacttgtgtgaat--cgacacgttgcagaaagagcaatcacacaagtgaaaatgatg 3395697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 36720205 - 36720068
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||| ||||||||||| |||| |||||||||  |||||  ||||||||||||||||||| ||||||| || |||||||  || |||   |    
T  36720205 agattgacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaa 36720106  T
Q  106 ttttaactcacacttgacacattaacatctcttcatta 143  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36720105 ttttaactcacacttgacacattaacatctcttcatta 36720068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 29651860 - 29651760
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 155  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||||  | ||||||||||| |||||||||||||||| |||| | |||||||| ||||    
T  29651860 tcatatcacttagatgttgttcaacatctactcttgcattcaatgtgaaactttaactcacatttgacacattaacatcacttcctcaagtatgaaactc 29651761  T
Q  156 t 156  Q
    |    
T  29651760 t 29651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 29977336 - 29977436
Alignment:
Q  36 cttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||||  ||||||||||| |||||||||||||  |||||||| ||| ||||||||||||||  | ||||||| |||||||||||||||||||    
T  29977336 cttaagacattaggtatatgagtcatatcacttatatgtttatcaacatccactcttgcattcaatgtggaactttaacttacacttgacacattaacat 29977435  T
Q  134 c 134  Q
    |    
T  29977436 c 29977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 34425545 - 34425692
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||| ||| || ||| |||||  |||||||| || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  34425545 gacaccacatcttcaccctaaacctcaagtcattaatatatgagttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 34425644  T
Q  112 ctcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
     ||||||||||||| ||||| ||| |   | |||||||||||||||||    
T  34425645 atcacacttgacacgttaacctctttctctcaagtatgagactctctg 34425692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 36729280 - 36729363
Alignment:
Q  63 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    ||||||||||||||||||||||||| |||||| |||||||  ||||| |||||||||||||| |||||||| ||| ||| ||||    
T  36729280 acttatatgttgttcaacatctactcttgcatacaatgtgaaatttttactcacacttgacaaattaacatatctccataaagt 36729363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 19040789 - 19040696
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  19040789 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 19040696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 41754117 - 41754198
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattc 96  Q
    |||||||||||||||||||||||| |||||||||  ||||||||| |||  ||||||||  |||||||||||||||||||||    
T  41754117 tcacaacttcacccaaaatcttaatacattagatacatgagtcatatcatatatatgtttctcaacatctactattgcattc 41754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 24968078 - 24967965
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||| ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  24968078 gacaccacatcttcaccctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 24967979  T
Q  112 ctcacacttgacac 125  Q
     |||||||||||||    
T  24967978 atcacacttgacac 24967965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 39839082 - 39839175
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| | ||||||    
T  39839082 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccgttaagt 39839175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 41754533 - 41754620
Alignment:
Q  218 gatatcaacattgagacttatgggg-agccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 306  Q
    ||||||| ||||| ||||||||||| ||||||| |||||||||||  |||||||||||| |||||| |||||||| ||||| ||||||||    
T  41754533 gatatcaccattgggacttatgggggagccaacgcttgtgtgaat--cgacacattgcataaagagcaatcacacgagtgataatgatgt 41754620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 38796902 - 38796791
Alignment:
Q  30 caaaatcttaagacattaga--tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    |||||||||||| |||||||  ||| |||||| |||||||||||||  ||||||| |||| || ||| |||| ||  ||||||| ||||| ||||||||     
T  38796902 caaaatcttaaggcattagacatattagtcatttcacttatatgtttctcaacatatactctttcatccaatatgaaattttaagtcacagttgacacac 38796803  T
Q  128 taacatctcttc 139  Q
    |||||| |||||    
T  38796802 taacatgtcttc 38796791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 36727624 - 36727707
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    |||| ||||||||||| ||||||||  | |||||||||| ||||||  ||||||  ||||||| ||||| ||||||||||||||    
T  36727624 atattagtcatctcacatatatgtttcttaacatctacttttgcatctaatgtgaaattttaagtcacaattgacacattaaca 36727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 20106660 - 20106738
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||||||| || ||||| ||||||| || ||| |||||| | |  |||||||||| |||||||||||||||    
T  20106660 gtcatctcacttatattttattcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 20106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 40599682 - 40599731
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
    ||||||| |||||| |||||||||||||||||| | ||||||||||||||    
T  40599682 tttaacttacacttaacacattaacatctcttcctcaagtatgagactct 40599731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 45659927 - 45659829
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 155  Q
    |||||||||||||||||| ||||| ||||||  |||||| |||| ||| | ||| | ||||| ||||||| ||||||||||| |  ||||| ||||||||    
T  45659927 tcatctcacttatatgtttttcaagatctac--ttgcatccaatttgtaactttgagtcacaattgacactttaacatctctcccataagtgtgagactc 45659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 19994423 - 19994490
Alignment:
Q  53 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttg 121  Q
    |||||||||||||||||| ||| ||| |||||||| |||||| |||| ||  |||||||||||||||||    
T  19994423 gagtcatctcacttatatattgctca-catctactcttgcatacaatttgaaattttaactcacacttg 19994490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 41753978 - 41754081
Alignment:
Q  30 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| |||||   ||||||||||||||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  41753978 caaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 41754077  T
Q  128 taac 131  Q
    ||||    
T  41754078 taac 41754081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 6466287 - 6465994
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| ||||||||  |||||||||||||| |||  |||| |  |||||| | ||||| || | ||||| |||||||| |||| |||||| ||||||      
T  6466287 tgagatcgacatcacttcttcacccaaaatcctaaagcattgggtatatgaataatctctctcaaatgtttttcaacatttactcttgcatccaatgtca 6466188  T
Q  104 tattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttccca-aaaa 202  Q
     ||||||| |||||    |||| ||||||| ||| |||||||    ||||||||||||| || |||||||||||| ||| |||| || |  ||||   ||    
T  6466187 aattttaattcaca----acacgttaacatttctccattaag----agactctctgtgtctgtgatccaccaccaggaagcactccctccccccacccaa 6466096  T
Q  203 tgttgaagcggg-tacgatatcaacattgagacttat-ggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaa 300  Q
    ||||||| |||| ||||||| || | ||| | ||||| |||||| ||||| |  ||||| |  |||||||||| |||||||| || |||||||| |||||    
T  6466095 tgttgaaccgggatacgataccatcgttgggccttataggggagtcaacattgatgtgatt--cgacacattgtagaaagagaaaccacacaagcgagaa 6465998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 31967092 - 31967130
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  31967092 atatgagtcatataacttatatgttgttcaacatctact 31967130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 12454067 - 12454015
Alignment:
Q  30 caaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaac 80  Q
    ||||| ||||| |||||||||  ||| ||||||||||||||||||||||||||    
T  12454067 caaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaac 12454015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 14903594 - 14903541
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtg 102  Q
    |||||| |||| |||||||||||||||||||| |||||| || |||||| ||||    
T  14903594 atatgaatcatatcacttatatgttgttcaacgtctactcttacattcattgtg 14903541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 5787203 - 5787287
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||| |||||||||  |||||||| |||||||||||||||| |||  | |||  || ||||||||| || ||||| ||||||||    
T  5787203 atatgggtcatctcatgtatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacat 5787287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 31963646 - 31963777
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| || ||||||||   ||| ||||||||||||| |||    ||||||| |||||||||||| |||| ||||||| || |||  |||||    
T  31963646 aatgagattgacaccagaacttcacatgaaaccttaagacattaggtattttggtcatctgacttatatgttgctcaaaatctactcttccatctaatgt 31963745  T
Q  102 gttattttaactcacacttgacacattaacat 133  Q
     | |  ||||||| || |||||||||||||||    
T  31963746 ataaagttaactcgcatttgacacattaacat 31963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 39403820 - 39403904
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||||||| |||||||||||||| || |||  || |||||||| |   | ||||||||||| || ||| ||||||||    
T  39403820 atatgagtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaactttaactcacatttaacaaattaacat 39403904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 13228830 - 13228533
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13228830 agattgacatcacaacttcacccaaaattttaaga-attagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgtta 13228732  T
Q  106 ttttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgt 205  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||||  ||||||||  ||| |||||||||||    
T  13228731 ttttaactcacacttgacacattaacatctctccattaagtatgagactttttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgt 13228632  T
Q  206 tgaagcgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatg 305  Q
    |||||||| || ||||||| |||||| |||||||||||||||||||||||||||||  | || |||||||||||||| |||||||||||||| |||||||    
T  13228631 tgaagcggatatgatatcaccattgaaacttatggggagccaacacttgtgtgaat--caacgcattgcagaaagagcaatcacacaagtgaaaatgatg 13228534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 54 - 307
Target Start/End: Original strand, 49953018 - 49953272
Alignment:
Q  54 agtcatctcacttatatgttgttcaacatctactat-tgc-attcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgag 151  Q
    ||||||||||||||||| |||||||| ||||| ||| ||| |||||||||||||||||||  ||||||||||||||||||||||||  ||||| ||||||    
T  49953018 agtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttattttaatccacacttgacacattaacatctctcaattaaatatgag 49953117  T
Q  152 actctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagccaaca 250  Q
    |||||  ||||  | |||||||||||||||| |||||||||| ||||||||||||||||||  || ||||||| | ||| ||||||  |||||| |||||    
T  49953118 actcttcgtgtccgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagcgtatatgatatcaccgttgggacttacgggggagacaaca 49953217  T
Q  251 cttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 307  Q
    ||||||||| |  ||| |||||||||||| |  || |||||||||||||||||||||    
T  49953218 cttgtgtgatt--cgaaacattgcagaaaaaacaaccacacaagtgagaatgatgtc 49953272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 50 - 307
Target Start/End: Complemental strand, 39974941 - 39974683
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagta 147  Q
    ||||||||||  |||| ||||||| ||||| ||||| |||   ||||||||| |||||||||||| |||||||||||||||| |||||||  ||||| ||    
T  39974941 tatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttattttaacccacacttgacacattaccatctctcaattaaata 39974842  T
Q  148 tgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagcc 246  Q
     || ||||| |||||  |||||||||||||||||| ||||||| || ||||||||||||||||||  || ||||||| |||||  |||||  |||||| |    
T  39974841 cgatactctttgtgtccgcgatccaccaccacgaagcacttccactccccaaaaatgttgaagcgtatatgatatcaccattggaacttacgggggagac 39974742  T
Q  247 aacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 307  Q
    ||||||||||||| |  |||||||||||||||| |  || |||||| ||||||||||||||    
T  39974741 aacacttgtgtgatt--cgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc 39974683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 282059 - 281823
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgt 101  Q
    |||||||| |||||||||  | || ||||||||| |||||||||    |||||||||||||| ||||||||||||| || || |||   | |||||||||    
T  282059 aatgagattgacatcacagttacatccaaaatctcaagacatta----tgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgt 281964  T
Q  102 gttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaa 201  Q
    ||||||||||| ||||||||||||||||||||||||  ||||| || ||||||||  ||||  |||||||||||||||  | |||||||||| | |||||    
T  281963 gttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacacagcacttccgctccacaaaa 281864  T
Q  202 atgttgaagcgggtacgatatcaacattgagacttatgggg 242  Q
    |||||||||||  || ||||||| ||||| |||||| ||||    
T  281863 atgttgaagcgtatatgatatcaccattgggacttacgggg 281823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 11559631 - 11559461
Alignment:
Q  23 cttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttga 122  Q
    ||||| |||||  |||||||||||| |||||  ||||| ||||||||||||||||||||| |||| |||||| |||| |   ||||||| |||||||| |    
T  11559631 cttcatccaaaggcttaagacattaaatatggatcatcacacttatatgttgttcaacatttactcttgcatacaatatcaaattttaagtcacacttta 11559532  T
Q  123 cacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgct 193  Q
    || ||||||||||||||| ||||| | ||||||||| ||| || ||||| ||| ||  ||||||| |||||    
T  11559531 catattaacatctcttcaataagtgtcagactctctatgtttgtgatcctccaacaaaaaccactcccgct 11559461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 6554630 - 6554517
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    ||||||||||||||||||||||||| ||||| ||||||| || ||| || | |   ||||||||||||||||||||||||||||||||||  | |||| |    
T  6554630 atatgagtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagttt 6554531  T
Q  149 gagactctctgtgt 162  Q
    |  |||||||||||    
T  6554530 gcaactctctgtgt 6554517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 17675240 - 17675385
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||| ||| |||||| |||||| ||||| || || ||||||||||||||||||||||||| || ||||| |||||||  | |||||    
T  17675240 gacaccacatcttcaccctaaaccttaagtcattagtatatgggttatatcacttatatgttgttcaacatctattaatgcatccaatgtggaactttaa 17675339  T
Q  112 ctcacacttgacacattaacatctcttcattaagtatgagactctc 157  Q
     ||||||||||||| ||||| ||| |   | |||||||||||||||    
T  17675340 atcacacttgacacgttaacttctttctctcaagtatgagactctc 17675385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 28475656 - 28475752
Alignment:
Q  81 atctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 177  Q
    ||||||| |||||| |||||||  ||||||||| |||||| |||||||||||||||| |||||||| | |||||||| ||||  | |||||||||||    
T  28475656 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacc 28475752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 50158268 - 50158172
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    |||||||||| ||||||| |||| ||||||  ||||||  | ||||||||| ||||||||||||||||||||| |||||||| | | ||||||||||    
T  50158268 ttatatgttgctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaagtgtcaaactctctgtg 50158172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 50814721 - 50814634
Alignment:
Q  218 gatatcaacattgagacttatgggg-agccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 306  Q
    ||||||| ||||| ||||||||||| ||||||| |||||||||||  |||||||||||| |||||| |||||||| ||||| ||||||||    
T  50814721 gatatcaccattgggacttatgggggagccaacgcttgtgtgaat--cgacacattgcataaagagcaatcacacgagtgataatgatgt 50814634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 6561065 - 6560964
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    |||||||||||||||||||||| |||||||||| ||| || |||| ||  | ||||||||||| |||| |||||| ||||||| | |||| | |||||||    
T  6561065 gtcatctcacttatatgttgtttaacatctacttttgtatccaatatggaactttaactcacatttgatacattagcatctctcccttaactgtgagact 6560966  T
Q  155 ct 156  Q
    ||    
T  6560965 ct 6560964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 55050117 - 55050004
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  55050117 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 55050020  T
Q  162 tatgcgatccaccacc 177  Q
    |||| |||| ||||||    
T  55050019 tatgagatctaccacc 55050004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 24183432 - 24183510
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaa 144  Q
    |||||||||| ||| |||||||| |||||| |||||||  ||||||||| |||||| |||||||||||||||| ||||||    
T  24183432 ttatatgttgctca-catctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaa 24183510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 36697844 - 36697769
Alignment:
Q  58 atctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||| |||||||||||||| |||||||||| |||||| |||||||  | ||||||||||| |||| ||||||||||    
T  36697844 atctaacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacat 36697769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 26289997 - 26290128
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||| || ||| | | ||||| |||||||||||      
T  26289997 cacttatatgttactcaacatctactcttacatacaatgtg--actttaactcgcacttgacacattaatatttctccctaaagtaggagactctctgca 26290094  T
Q  162 tatgcgatccaccaccacgaaccacttccgcttc 195  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  26290095 tatgagatctaccaccataaaccaattctgcttc 26290128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 314412 - 314323
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 138  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || ||   |   |||||||||||| |||||||||||||||||||||    
T  314412 atatgagtcatctcacttatatgttattcaaaatctactcttctatccaccatagaattttaactcacgcttgacacattaacatctctt 314323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 35695134 - 35695054
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||  |||||||||||||||||| |||||||| ||||| || |||||  | | |||||||||||||||||||||||||    
T  35695134 tgagtcaaatcacttatatgttgttcagcatctactcttgca-tccatgtggaactctaactcacacttgacacattaacat 35695054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 42757527 - 42757698
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcatt--caatgt 101  Q
    |||||| ||||||||   |||||||||| || |||||||||||  |||||| | ||||| || ||||||| ||||||||||||| ||||||   ||||||    
T  42757527 tgagatcgacatcaccttttcacccaaagtcctaagacattaggtatatga-taatctccctcatatgtttttcaacatctactcttgcatatccaatgt 42757625  T
Q  102 gttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacca 178  Q
       | ||| ||||||| |||||||||||||||||||  |||||    ||||||||| |||| || ||||||||||||    
T  42757626 taaacttttactcacaattgacacattaacatctctctattaa----gagactctccgtgtctgtgatccaccacca 42757698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 42729464 - 42729545
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| || |||   |||||||||  |||||||||| ||||||    
T  42729464 atatgagtcatctcacttatatgtttctcaacatgtactattgcatacattgttgaattttaact--cacttgacacgttaaca 42729545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 56340350 - 56340282
Alignment:
Q  63 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 131  Q
    ||||||||||||||||||||||| |||||||| |||| ||  | ||||| ||||||||||||| |||||    
T  56340350 acttatatgttgttcaacatctattattgcatccaatatggaactttaaatcacacttgacacgttaac 56340282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 42756767 - 42756925
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| ||||| |||||| |||||||| ||||  ||||  ||||| | |||||||||||| |||| || || | |||||| ||||||      
T  42756767 tgagattgacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaacttatatgttgctcaatatatagtcttgcatccaatgtag 42756866  T
Q  104 tattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 162  Q
     | ||| |||||||  |||||||||||||||||| | |||||| ||||| |||| ||||    
T  42756867 aagttttactcacaaatgacacattaacatctctcccttaagtgtgagattctccgtgt 42756925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 316586 - 316508
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||| |||||||||||| |||| ||||||| || |||  ||||| | |||||||||| || |||||||||||||||    
T  316586 gtcatctgacttatatgttgctcaaaatctactctttcatctaatgtataattttaactcgcatttgacacattaacat 316508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 13918326 - 13918248
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||| |||||||||||| || ||||||| || ||| |||||| | |  |||||||||| |||||||||||||||    
T  13918326 gtcatctcaattatatgttgttgaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 13918248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 11560299 - 11560199
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    |||||||||| ||||| |||| ||| || |||| |||||| |||||| | | |||||||||| | |||||||||||||||||| | |||||| || ||||    
T  11560299 gtcatctcacgtatatattgt-caatatatactcttgcatccaatgtataagtttaactcacccatgacacattaacatctctcccttaagtgtgggact 11560201  T
Q  155 ct 156  Q
    ||    
T  11560200 ct 11560199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 14266234 - 14266310
Alignment:
Q  25 tcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaat 99  Q
    |||||| ||||||||||| |||||  ||||| |||||||||||||| ||||||||||  ||||||||| ||| ||||    
T  14266234 tcaccctaaatcttaagaaattagttatatgggtcatctcacttatttgttgttcaaattctactatttcatccaat 14266310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 52543045 - 52543094
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
    ||||||| |||||||||||||||| |||||||| | ||||||||||||||    
T  52543045 tttaacttacacttgacacattaatatctcttcctcaagtatgagactct 52543094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 22681165 - 22681319
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| || ||||| ||| |||||||||||||  ||||||||||| |||||||| | |||||||||   |||| |||||  |||   |     
T  22681165 tgagattgacaccacatctccaccctaaaccttaagacattaggtatatgagtcatatcacttatttattgttcaacggttactcttgcagccaagacga 22681264  T
Q  104 tattttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
     | || | |||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  22681265 aactt-acctcacacttgacacattaacatttattccttaagtacgagactctctg 22681319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 9694408 - 9694459
Alignment:
Q  30 caaaatcttaagacattagat-atgagtcatctcacttatatgttgttcaac 80  Q
    ||||||||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  9694408 caaaatcttaagacatttgattatgagtcatctcacttataagatgttcaac 9694459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 39977281 - 39977246
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39977281 gtcatctcacttatatgttattcaacatctactatt 39977246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 48683248 - 48683181
Alignment:
Q  70 tgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 137  Q
    ||||| ||||| || ||| |||| |||||||||  | ||||||||||| |||||||||||||||||||    
T  48683248 tgttgctcaacttccactcttgctttcaatgtgaaactttaactcacatttgacacattaacatctct 48683181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 313155 - 313117
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  313155 atatgagtcatataacttatatgttgttcaacatctact 313117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 6553372 - 6553334
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  6553372 atatgagtcatataacttatatgttgttcaacatctact 6553334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 4237132 - 4237193
Alignment:
Q  76 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 137  Q
    |||||||| ||| ||||||||||||||  ||||||||| |||| |  |||||||||||||||    
T  4237132 tcaacatccactcttgcattcaatgtggaattttaacttacacgtagcacattaacatctct 4237193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 13230986 - 13230882
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    ||||||||| ||||||||   |||||||||||||||| ||   |||||  ||||||| ||||| || |||  ||||||| ||||| |||||| |||||||    
T  13230986 gtcatctcatttatatgtgtctcaacatctactattgtatcttatgtgaaattttaaatcacaattaacattttaacatatcttccttaagtgtgagact 13230887  T
Q  155 ctctg 159  Q
     ||||    
T  13230886 gtctg 13230882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 13668194 - 13668274
Alignment:
Q  76 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
    |||||||||||||||||||  ||||||  | ||||| ||| | ||||||||||||||| ||||  | |||| |||||||||    
T  13668194 tcaacatctactattgcatgtaatgtggaactttaaatcataattgacacattaacatatctttctcaagtttgagactct 13668274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 13681051 - 13681131
Alignment:
Q  76 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
    |||||||||||||||||||  ||||||  | ||||| ||| | ||||||||||||||| ||||  | |||| |||||||||    
T  13681051 tcaacatctactattgcatgtaatgtggaactttaaatcataattgacacattaacatatctttctcaagtttgagactct 13681131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 13919377 - 13919329
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactc 155  Q
    ||||| |||||||||||||||| |||||||| | |||||| ||||||||    
T  13919377 tttaattcacacttgacacattgacatctctccgttaagtttgagactc 13919329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 38015878 - 38016177
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38015878 tgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgt 38015977  T
Q  104 tattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaat 203  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||   |||||||||||||||||||||||||| | | |||||||    
T  38015978 tattttaactcacacttgacacattaacatctctccatcaagtatgagact-tttgtgtccacgatccaccaccacgaaccacttccgttccacaaaaat 38016076  T
Q  204 gttgaagcgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatga 303  Q
    |||||||||| || ||||||  ||||| |||||||||||||||| |||||||||||||  ||| | ||||||||||||| |||||||||||| | |||||    
T  38016077 gttgaagcggatatgatatcgccattgggacttatggggagccagcacttgtgtgaat--cgatatattgcagaaagagcaatcacacaagtaataatga 38016174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 9012711 - 9012812
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    |||| ||||||||||||||| |||||||||||| ||| ||||| ||||  ||||||||| |||||||||||||||| || ||| |||||||| |||||||    
T  9012711 gtcagctcacttatatgttgctcaacatctactcttgaattcattgtgaaattttaactaacacttgacacattaatatgtctccattaagtgtgagact 9012810  T
Q  155 ct 156  Q
    ||    
T  9012811 ct 9012812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 9025041 - 9024952
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 138  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | | | ||||||||||||||||||||||||||||||||||    
T  9025041 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctctt 9024952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 33014000 - 33014122
Alignment:
Q  184 cacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagccaacacttgtgtgaatgacgacacattgcagaaagag 282  Q
    |||||||||| ||||||||||||||||||  || ||||||| ||||| ||||||   ||||| |||||||||||||| |  |||||||||||||||| |     
T  33014000 cacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacttacatgggagacaacacttgtgtgatt--cgacacattgcagaaaaaa 33014097  T
Q  283 taatcacacaagtgagaatgatgtc 307  Q
     || |||||||||||||||||||||    
T  33014098 caaccacacaagtgagaatgatgtc 33014122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 33013852 - 33013981
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactat-tgca-ttcaatgtgt 103  Q
    |||||| |||||||||| | || ||||  |||||||||||||    |||||||||||||| ||||||||||||| || || ||| || | ||||||||||    
T  33013852 tgagattgacatcacaattacatccaagttcttaagacatta----tgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgt 33013947  T
Q  104 tattttaactcacacttgacacattaacatctct 137  Q
    ||||||||| |||||||||||||||| |||||||    
T  33013948 tattttaacccacacttgacacattagcatctct 33013981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 27594522 - 27594641
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||  ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| ||||||||||||||||  | |||||    
T  27594522 gacaccacatcttcaccttaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcattcaatgtggaactttaa 27594621  T
Q  112 ctcacacttgacacattaac 131  Q
     ||||||||||||| |||||    
T  27594622 atcacacttgacacgttaac 27594641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 20966207 - 20966121
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||| | | |||||||| |||||||||||| |||||||| |||||||  | ||||| |||||||||||||||||||||||    
T  20966207 atatgagtcatataatttatatgtcgttcaacatctattattgcatccaatgtggaactttaaatcacacttgacacattaacatct 20966121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 8128432 - 8128563
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  8128432 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 8128529  T
Q  162 tatgcgatccaccaccacgaaccacttccgcttc 195  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  8128530 tatgagatctaccaccataaaccaattctgcttc 8128563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 19910596 - 19910682
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||| |||||||  ||||| || |||| ||| | |||||||||||    
T  19910596 atatgactcatctcacttatatgttgttcaatatctactcttgcatacaatgtggaattttgacacacatttgtcgcattaacatct 19910682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 29865827 - 29866004
Alignment:
Q  18 cacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactca 115  Q
    |||| |||||||| ||| |||| || |||||  |||||| ||||  ||||||||||||  |||||||| ||| || ||| |||||||  | ||||||||     
T  29865827 cacatcttcaccccaaaccttatgaaattaggtatatgaatcataacacttatatgttactcaacatcaactcttacatccaatgtg--actttaactcg 29865924  T
Q  116 cacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttc 195  Q
    |||||||||||||||||| ||||| | | ||| |||||||||||  |||| |||| |||||||  ||||| ||| |||||    
T  29865925 cacttgacacattaacatttcttcctcatgtacgagactctctgcatatgagatctaccaccataaaccaattctgcttc 29866004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 4062231 - 4062136
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||    
T  4062231 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctg 4062136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 19320306 - 19320433
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagata-tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||| ||| ||| ||||||||||||| || || ||||| ||||||||||||||||||||||| ||| | ||||  || |||  | |||||    
T  19320306 gacaccacatcttcgccctaaaccttaagacattaggtagtgggtcatatcacttatatgttgttcaacatccactgtcgcatctaacgtgcaactttaa 19320405  T
Q  112 ctcacacttg--acacattaacatctct 137  Q
    ||| ||||||  | ||||||||||||||    
T  19320406 ctcgcacttgatatacattaacatctct 19320433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 10176006 - 10175893
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    ||||||| | ||||||||||| ||||||||||||||  ||||| |||||| ||||||| ||||  ||||||| || | |||||| | | |||  ||||||    
T  10176006 gacatcatatcttcacccaaagtcttaagacattagatatatgggtcatcacacttatgtgttactcaacatataatcttgcatac-acgtgaaatttta 10175908  T
Q  111 actcacacttgacac 125  Q
     ||||||||||||||    
T  10175907 gctcacacttgacac 10175893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 159
Target Start/End: Original strand, 7332935 - 7333030
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  |||| ||||| |||||||||||||||||| ||| | | ||||| || ||||||||    
T  7332935 cacttatatgttactcaatatctactcttacatccaatgtg--atttgaactcgcacttgacacattaacatttctccctcaagtacgaaactctctg 7333030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 11770399 - 11770465
Alignment:
Q  91 gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctc 157  Q
    |||| |||||||| | ||||| ||||| | ||||||||||| ||||| | |||||||||||||||||    
T  11770399 gcatccaatgtgtaactttaaatcacattcgacacattaacttctctcccttaagtatgagactctc 11770465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 33009855 - 33009903
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||||||    
T  33009855 tttaactcacacatgacacattaacatctctt-tttaagtgtgagactct 33009903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 2260855 - 2260887
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttc 139  Q
    |||||||||||||||||||||||||||| ||||    
T  2260855 tttaactcacacttgacacattaacatcacttc 2260887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 42797242 - 42797532
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  42797242 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaactc 42797341  T
Q  115 acacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcggg 214  Q
    ||||||||||||||||||||| |  |||||| |||||||||||||| | ||| ||||||||||||  |||||||||||| ||||||||||||||||| |     
T  42797342 acacttgacacattaacatctttctattaagcatgagactctctgtatctgctatccaccaccacagaccacttccgctccccaaaaatgttgaagcaga 42797441  T
Q  215 tacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 307  Q
    || ||||||| |||||||||||| | ||||| |||||||||||||||  ||||||||||||||||||| |||||||| ||||| |||||||||    
T  42797442 tatgatatcaccattgagacttacgaggagcaaacacttgtgtgaat--cgacacattgcagaaagagcaatcacacgagtgataatgatgtc 42797532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 23141752 - 23142042
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23141752 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtttctcaacatctactattgcattcaatgtgttattttaactc 23141851  T
Q  115 acacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcggg 214  Q
    | ||||||||| |||||||||||  |||||| |||||||||||||| | ||| ||||||||||||| |||||||||||| ||| ||||||||||||| |     
T  23141852 atacttgacacgttaacatctctctattaagcatgagactctctgtatctgctatccaccaccacggaccacttccgctccccgaaaatgttgaagcaga 23141951  T
Q  215 tacgatatcaacattgagacttat-ggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 306  Q
    || ||||||| ||||||||||||| ||||||||||| |||||||||||  |||||||||||| |||||| |||||||| ||||| ||||||||    
T  23141952 tatgatatcaccattgagacttatgggggagccaacgcttgtgtgaat--cgacacattgcataaagagcaatcacacgagtgataatgatgt 23142042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 13756666 - 13756376
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  13756666 tcacaacttcacccaaaatcttaagacattagatacatgagtcatttcacttaaatgtttctcaacatctactattgcattcaatgtgttattttaactc 13756567  T
Q  115 acacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcggg 214  Q
    ||||||||||||||||||| |||  |||||| |||||||||| ||| | | | ||||||||||||| |||||||||||| ||||||||||||||||| |     
T  13756566 acacttgacacattaacatatctatattaagcatgagactctttgtatctactatccaccaccacggaccacttccgctccccaaaaatgttgaagcaga 13756467  T
Q  215 tacgatatcaacattgagacttatg-gggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgt 306  Q
    || ||||||| ||||| |||||||| || ||||||| |||||||||||  ||||||||||||||||||| |||||||||||||| ||||||||    
T  13756466 tatgatatcaccattgggacttatgtggaagccaacgcttgtgtgaat--cgacacattgcagaaagagcaatcacacaagtgataatgatgt 13756376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 10901390 - 10901547
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| |||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  10901390 agattgacatcacaacttcacccaaaatcttaacacattagatatacgagtcatctcacttgtatgttactcaacatctactattgcattcaatgtgtta 10901489  T
Q  106 ttttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgta 163  Q
    |||||||||||| |||| |||||||||||||| ||||||||| ||||||||| |||||    
T  10901490 ttttaactcacatttgatacattaacatctctccattaagtacgagactctccgtgta 10901547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 307
Target Start/End: Original strand, 21588824 - 21589082
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactat-tg-cattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagta 147  Q
    |||||||||||||||| ||||||| ||||| ||||| ||| || ||||||||||||||||||||| ||| |||||||||||| |||||||  ||||| ||    
T  21588824 tatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttattttaacccacccttgacacattaccatctctcaattaaata 21588923  T
Q  148 tgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagcc 246  Q
     || |||||  ||||   ||||||||||||||||| ||||| |||| |||| || ||||||||||  || ||||||| |||||  |||||  |||||| |    
T  21588924 cgatactcttcgtgtccacgatccaccaccacgaagcactttcgctccccataattgttgaagcgtatatgatatcaccattggaacttacgggggagac 21589023  T
Q  247 aacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 307  Q
    ||||||||||||| |  |||||||||||||||| |  || |||||| ||||||||||||||    
T  21589024 aacacttgtgtgatt--cgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc 21589082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 30254663 - 30254504
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcat--ctcactt-atatgttgttcaacatctactattgcattcaatgtg 102  Q
    |||||||||||||| ||||||||||| ||||  ||||||||  ||||||||| |  ||||||| |||||||||||||||| |||  ||||||  | |||     
T  30254663 agatggacatcacatcttcacccaaagtcttttgacattaggtatatgagtcgtgtctcactttatatgttgttcaacatatacgtttgcatctattgtc 30254564  T
Q  103 ttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 162  Q
      ||||||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||    
T  30254563 gaattttaactcacatttgacacattaacatctttccgttaagtatgagactctccgtgt 30254504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 45247875 - 45247765
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    ||||||||||||||| |||||| ||||||||||  |||| |||||||||| ||   | |||||||||||||||||| ||||| |||||| | |||||| |    
T  45247875 atatgagtcatctcatttatattttgttcaacacatacttttgcattcaacgtagaactttaactcacacttgacatattaaaatctctcccttaagtgt 45247776  T
Q  149 gagactctctg 159  Q
    |||||||||||    
T  45247775 gagactctctg 45247765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 23686732 - 23686598
Alignment:
Q  27 acccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgaca 124  Q
    |||||||| |||||| ||| ||||||   |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||||||    
T  23686732 acccaaaaccttaagtcatcagatatatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgaca 23686633  T
Q  125 cattaacatctcttcattaagtatgagactctctg 159  Q
     |||||||||||| | |||||| ||| ||||||||    
T  23686632 tattaacatctctcccttaagtgtgatactctctg 23686598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 40885851 - 40885741
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    |||||||| || |||||||||||||||||||||| || |||||||| |||||||  ||||||| ||||||||||||  ||||| ||| |   | ||||||    
T  40885851 atatgagttatatcacttatatgttgttcaacatttattattgcatccaatgtgaaattttaaatcacacttgacatgttaacctctttctctcaagtat 40885752  T
Q  149 gagactctctg 159  Q
    |||||||||||    
T  40885751 gagactctctg 40885741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 23683214 - 23683105
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | |||||||||||||| || ||| |   | ||||||    
T  23683214 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacattgacctctttatctcaagtat 23683115  T
Q  149 gagactctct 158  Q
    ||||||||||    
T  23683114 gagactctct 23683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 38290658 - 38290486
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacactt 120  Q
    ||||||| ||| ||||||| ||||||  |||| ||||| | |||||||||||| || ||||| | || ||||||  |||||   ||| ||||||||||||    
T  38290658 cttcaccaaaagtcttaaggcattaggtatatcagtcaacccacttatatgtttttaaacattttctcttgcatgtaatgtaaaattataactcacactt 38290559  T
Q  121 gacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgct 193  Q
    ||||||||||||||||||  | || | ||||||||||| || ||| ||||||| |||| || ||||| |||||    
T  38290558 gacacattaacatctctttttcaattgtgagactctctatgcatgtgatccactaccatgagccactcccgct 38290486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 13759030 - 13758881
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| ||||  || |||||||| ||||||||||||| |||  | ||||||||||| |||||||||| |||| ||||| |||||| |||       
T  13759030 aatgagattgacaccacattttgacccaaaaccttaagacattaggtatacgggtcatctcactaatatgttgtttaacaactactcttgcatccaa--- 13758934  T
Q  102 gttattttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
      ||  ||||||||||||||| ||||||||||||||   |||| |||||||||||    
T  13758933 --taggttaactcacacttgatacattaacatctctcttttaactatgagactct 13758881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 16313248 - 16313379
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  16313248 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 16313345  T
Q  162 tatgcgatccaccaccacgaaccacttccgcttc 195  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  16313346 tatgagatctaccaccataaaccaattctgcttc 16313379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 17888130 - 17888052
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| ||||||| || ||| || ||| | || |||||||||| |||||||||||||||    
T  17888130 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 17888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 195
Target Start/End: Complemental strand, 34800903 - 34800772
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  34800903 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 34800806  T
Q  162 tatgcgatccaccaccacgaaccacttccgcttc 195  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  34800805 tatgagatctaccaccataaaccaattctgcttc 34800772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 41527027 - 41527140
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   |||||||||||||||||||||||||| |||||||  | |||| |    
T  41527027 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctcttattcaagttt 41527126  T
Q  149 gagactctctgtgt 162  Q
    |  |||||||||||    
T  41527127 gcaactctctgtgt 41527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 367319 - 367212
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | |||||||||||||||||| |||||||| ||| | |||||| |    
T  367319 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgt 367220  T
Q  149 gagactct 156  Q
    || |||||    
T  367219 gatactct 367212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 19263304 - 19263432
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| || || || ||| |||||||||||||  ||||||||||| |||||||| |||||||||||   |||| |||||| ||||| |     
T  19263304 tgagattgacaccacatctccatcctaaaccttaagacattaggtatatgagtcatatcacttatttgttgttcaacggttactcttgcatccaatgcga 19263403  T
Q  104 tattttaactcacacttgacacattaacat 133  Q
     |  ||||||||||||||||||||||||||    
T  19263404 ga-cttaactcacacttgacacattaacat 19263432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 357599 - 357546
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtg 102  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  357599 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtg 357546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 16220246 - 16220354
Alignment:
Q  31 aaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    |||| |||||||||||||||  || |||| || ||||||||| |||||||| || ||||||| |||||||| | | ||||||||| |||| ||  |||||    
T  16220246 aaaagcttaagacattagatgtattagtcttcccacttatattttgttcaatatatactatttcattcaatttataattttaacttacacatggtacatt 16220345  T
Q  129 aacatctct 137  Q
    |||||||||    
T  16220346 aacatctct 16220354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 16250039 - 16250169
Alignment:
Q  63 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 162  Q
    |||||||||||  |||||||||||| || ||| |||||||  | |||| ||| |||||||||||||||||| ||||| | ||||| |||| ||||||  |    
T  16250039 acttatatgttactcaacatctactcttacatccaatgtg--actttatctcgcacttgacacattaacatttcttcctcaagtacgagattctctgcat 16250136  T
Q  163 atgcgatccaccaccacgaaccacttccgcttc 195  Q
    ||| |||| |||||||  ||||| ||| |||||    
T  16250137 atgagatctaccaccataaaccaattctgcttc 16250169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 26622857 - 26622938
Alignment:
Q  53 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta-ttttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||||||| ||||||||  ||| |||||   | || ||||||||||||||||||| |||||    
T  26622857 gagtcatctcacttatatgttgttcaacacctactattttatttaatgttagacttataactcacacttgacacatcaacat 26622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 37251164 - 37251278
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  37251164 cacttatatgttactcaatatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 37251261  T
Q  162 tatgcgatccaccacca 178  Q
    |||| |||| |||||||    
T  37251262 tatgagatctaccacca 37251278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 40260529 - 40260477
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
    ||||||| | ||||||||||||||||||||||| | |||||||||||||||||    
T  40260529 tttaacttatacttgacacattaacatctcttcctcaagtatgagactctctg 40260477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 8358803 - 8358881
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| ||||||| || |||  | ||| | |  |||||||||| |||||||||||||||    
T  8358803 gtcatctcacttatatgttgttcaaaatctactcttccatcgagtgtataacgttaactcacatttgacacattaacat 8358881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 13758119 - 13758078
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactatt 90  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  13758119 atatgagtcatctcacgtatatgttattcaacatctactatt 13758078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 15342301 - 15342402
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| ||||||| || |||| ||| |||    
T  15342301 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15342400  T
Q  155 ct 156  Q
    ||    
T  15342401 ct 15342402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 15431366 - 15431467
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| ||||||| || |||| ||| |||    
T  15431366 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15431465  T
Q  155 ct 156  Q
    ||    
T  15431466 ct 15431467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 15522670 - 15522771
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| ||||||| || |||| ||| |||    
T  15522670 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15522769  T
Q  155 ct 156  Q
    ||    
T  15522770 ct 15522771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 8357693 - 8357749
Alignment:
Q  105 attttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    |||||||||||||||||||||||| |||| ||  |||||||| ||||||||| ||||    
T  8357693 attttaactcacacttgacacattgacatttcaacattaagtttgagactctttgtg 8357749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 42797103 - 42797206
Alignment:
Q  30 caaaatcttaagacattaga--tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| ||  ||| ||||||||||||||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  42797103 caaaaccttaagacattggaaatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataactttaaatgacacgtgacacat 42797202  T
Q  128 taac 131  Q
    ||||    
T  42797203 taac 42797206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 17871311 - 17871244
Alignment:
Q  64 cttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 131  Q
    ||||||||||| |||| || |||| || ||||||||||   | |||||||||||||||||||||||||    
T  17871311 cttatatgttgctcaatatttactcttacattcaatgtaaaactttaactcacacttgacacattaac 17871244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 18953362 - 18953425
Alignment:
Q  69 atgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    ||||| ||||||||||||| |||||| ||||||   ||||||| ||||| ||||||||||||||    
T  18953362 atgtttttcaacatctactcttgcatccaatgtcaaattttaattcacagttgacacattaaca 18953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 21586497 - 21586532
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21586497 gtcatctcacttatatgttattcaacatctactatt 21586532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 23525268 - 23525197
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacca 178  Q
    |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||  |||| |||| |||||||    
T  23525268 tttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgcatatgagatctaccacca 23525197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 45528310 - 45528252
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| |||||||||| ||||    
T  45528310 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgctcaa 45528252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 14375117 - 14374999
Alignment:
Q  66 tatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatg 165  Q
    ||||||||| |||||||||||| |||||  |||| ||  | ||| |||| || |||| | ||||||||||||||||||||| | | | |||| || || |    
T  14375117 tatatgttggtcaacatctacttttgcacacaatatgaaagttttactctcaattgataaattaacatctcttcattaagtgtcacagtctccgtatacg 14375018  T
Q  166 cgatccaccaccacgaacc 184  Q
     |||||||||||| |||||    
T  14375017 tgatccaccaccaagaacc 14374999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 14376166 - 14376132
Alignment:
Q  124 acattaacatctcttcattaagtatgagactctct 158  Q
    |||||||||| ||||||||||||||||||||||||    
T  14376166 acattaacatatcttcattaagtatgagactctct 14376132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 35226668 - 35226758
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttccc 197  Q
    ||||||| | |||||||| | |||||| ||||| |||||||||||||||| ||  |||| |||| |||| || |||||||| | |||||||    
T  35226668 tttaactaatacttgacatactaacatttcttccttaagtatgagactctttgcatatgtgatctaccatcatgaaccactccagcttccc 35226758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 758151 - 758098
Alignment:
Q  90 tgcattcaatgtgttattttaactcacacttgacacattaacatctcttcatta 143  Q
    |||||||||||||  ||||||||| |||||||||||||||| || ||| |||||    
T  758151 tgcattcaatgtggaattttaacttacacttgacacattaaaatatctccatta 758098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 5685916 - 5685867
Alignment:
Q  109 taactcacacttgacacattaacatctcttcattaagtatgagactctct 158  Q
    |||||||||| |||||||||||||||||| | |||||| ||||| |||||    
T  5685916 taactcacacatgacacattaacatctctcctttaagtgtgagattctct 5685867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 41787087 - 41787116
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||||||||||||||||||||||||    
T  41787087 tatgagtcatctcacttatatgttgttcaa 41787116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 45245107 - 45245034
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatcta 85  Q
    |||| |||| |||||||  ||| |||||| |||||  |||||||| || |||||||||||||||||||||||||    
T  45245107 gacaccacatcttcaccttaaaccttaagtcattaatatatgagttatatcacttatatgttgttcaacatcta 45245034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 4072945 - 4072889
Alignment:
Q  30 caaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctac 86  Q
    ||||| ||||||||||||| ||||  || ||| |||||||||||| |||||||||||    
T  4072945 caaaaccttaagacattagttatggatcttcttacttatatgttgctcaacatctac 4072889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 23141613 - 23141716
Alignment:
Q  30 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| |||||   ||||||||||||| ||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  23141613 caaaaccttaagacattggatatattagtcatctcacttgtatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 23141712  T
Q  128 taac 131  Q
    ||||    
T  23141713 taac 23141716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 45527389 - 45527334
Alignment:
Q  34 atcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||||||| |||  || |||||| |||||||||||| ||||||||||||    
T  45527389 atcttaagacattaggtatacgactcatctaacttatatgttggtcaacatctact 45527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 43387047 - 43387344
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||||||||||| |    
T  43387047 agattgacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatgtgtaa 43387146  T
Q  106 ttttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgt 205  Q
    ||||||||||||||||||||||||||||||||   ||||||| ||||||||| |||| ||||||||| |||||||||||||||  ||| || ||||||||    
T  43387147 ttttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgcgatcca-caccacgaaccacttttgctcccaaaaaatgt 43387245  T
Q  206 tgaagcgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatg 305  Q
    |||| ||| || ||||||| ||||| |||||||||||| |||||||||||||||||   |||||| || ||||| || |||||||||||||| ||| |||    
T  43387246 tgaaacggatatgatatcaccattgggacttatggggatccaacacttgtgtgaat--tgacacaatgtagaaaaagcaatcacacaagtgaaaataatg 43387343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 22636310 - 22636447
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatg 149  Q
    ||||||||| ||| ||||||||| | |||||||||||| |||||||||| ||   |||||||||||||||||| | |||||||||||| ||||||||||     
T  22636310 tatgagtcacctcccttatatgtagctcaacatctactcttgcattcaaagtcaaattttaactcacacttgaaaaattaacatctctccattaagtata 22636409  T
Q  150 agactctctgtgtatgcgatccaccaccacgaaccact 187  Q
    ||||||||| ||| || ||||||| |||| ||||||||    
T  22636410 agactctctatgtttgggatccacaaccaagaaccact 22636447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 47783270 - 47783134
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacactt 120  Q
    |||||||| ||| |||||| |||||   ||||||||||| |||||||||||||||| ||||  |||| |||||  |||||||  | ||||||||||||||    
T  47783270 cttcaccctaaaccttaaggcattatgtatatgagtcatatcacttatatgttgttaaacaattactcttgcagccaatgtgaaactttaactcacactt 47783171  T
Q  121 gacacattaacatctcttcattaagtatgagactctc 157  Q
    ||||||||||||||| ||| |||| || |||||||||    
T  47783170 gacacattaacatctattccttaaatacgagactctc 47783134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 20306724 - 20306820
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    ||||||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  20306724 atatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 20306820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 40946611 - 40946518
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  40946611 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 40946518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 1992514 - 1992421
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  | |||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  1992514 tgagtcatctcacttaaatgtttctcataa-ctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 1992421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 17006492 - 17006623
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  17006492 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 17006589  T
Q  162 tatgcgatccaccaccacgaaccacttccgcttc 195  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  17006590 tatgagatctaccaccataaaccaattctgcttc 17006623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 22541995 - 22541885
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||| || |||||||||||||  |||||| |    
T  22541995 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaaattagaactttaactcacacttggcatattaacatctctttcttaagtgt 22541896  T
Q  149 gagactctctg 159  Q
    || ||||||||    
T  22541895 gatactctctg 22541885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 30001736 - 30001829
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||| ||||||||||||||||||||||| ||||||||    
T  30001736 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaacttacacttgacacattaacatctctccattaagt 30001829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 15524807 - 15524702
Alignment:
Q  54 agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagac 153  Q
    |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||| || |||||||||||| | |||||| ||| ||    
T  15524807 agtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttggcatattaacatctctcccttaagtgtgatac 15524708  T
Q  154 tctctg 159  Q
    ||||||    
T  15524707 tctctg 15524702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 21469816 - 21469893
Alignment:
Q  51 atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  21469816 atgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 21469893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 34159599 - 34159485
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  34159599 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 34159502  T
Q  162 tatgcgatccaccacca 178  Q
    |||| |||| |||||||    
T  34159501 tatgagatctaccacca 34159485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 49879228 - 49879097
Alignment:
Q  31 aaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    |||| ||||| |||||||||  || |||| || |||||||| ||||||||| || ||||||| |||||||| | | |||||||||||||| ||  |||||    
T  49879228 aaaagcttaaaacattagatgtattagtcttcccacttatacgttgttcaatatatactatttcattcaatttataattttaactcacacatggtacatt 49879129  T
Q  129 aacatctcttcattaagtatgagactctctgt 160  Q
    ||||||||| | |||| | | |||||||||||    
T  49879128 aacatctctcccttaaatgtaagactctctgt 49879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 7844572 - 7844719
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||| | ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| ||||||   | |||||    
T  7844572 gacaccacatcttcactctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtagaactttaa 7844671  T
Q  112 ctcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
     ||||| ||||||| ||||| ||| |   | |||||||||||||||||    
T  7844672 atcacaattgacacgttaacctctttctctcaagtatgagactctctg 7844719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 19065744 - 19065823
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  19065744 atatgggtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 19065823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 19113634 - 19113713
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  19113634 atatgggtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 19113713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 22538474 - 22538395
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| |||||||| || || |||||||| |||||||  | ||||| | ||||||||||||||    
T  22538474 atatgagtcatatcacttatatattgttcaatatttattattgcatccaatgtggaactttaaataacacttgacacatt 22538395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 3838181 - 3838251
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 177  Q
    ||||||| |||||||||||||||||||||| || | |||||||||||||| ||| | || |||| ||||||    
T  3838181 tttaacttacacttgacacattaacatctcgtcctcaagtatgagactctttgtatctgtgatctaccacc 3838251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 43385111 - 43385197
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||  | | |   | ||||||||| |||||||| ||||||||||    
T  43385111 atatgagtcatctcacatatatgttattcaacatctactattccatcaattctagaactttaactcatacttgacatattaacatct 43385197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 8313411 - 8313508
Alignment:
Q  80 catctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 177  Q
    |||||||| |||||| ||||||   |||||||||  ||||| | |||||||||||||| |||||||| | |||||||| ||||  | |||||||||||    
T  8313411 catctactcttgcatacaatgtaaaattttaactttcacttaatacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacc 8313508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 3981705 - 3981637
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||| |||||||||||||||| |||||||||||||   | ||||| | |||||| ||||||||||||    
T  3981705 ttatatattgttcaacatctactcttgcattcaatgtaaaactttaatttacactttacacattaacat 3981637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 3982760 - 3982729
Alignment:
Q  107 tttaactcacacttgacacattaacatctctt 138  Q
    ||||||||||||||||||||||||||||||||    
T  3982760 tttaactcacacttgacacattaacatctctt 3982729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 45919473 - 45919511
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  45919473 atatgagtcatataacttatatgttgttcaacatctact 45919511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 49880615 - 49880577
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  49880615 atatgagtcatataacttatatgttgttcaacatctact 49880577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 16852024 - 16851963
Alignment:
Q  83 ctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaa 144  Q
    ||||| |||||| |||||||  ||||||||| |||||  |||||||||||||||| ||||||    
T  16852024 ctactcttgcatacaatgtgaaattttaacttacactgaacacattaacatctctccattaa 16851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 19098995 - 19099067
Alignment:
Q  27 acccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattca 97  Q
    |||||||| |||||| ||| ||||||   |||||||||| |||||| ||||||||||| |||| |||||||||    
T  19098995 acccaaaaccttaagtcatcagatatatcagtcatctcatttatattttgttcaacatatacttttgcattca 19099067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 43385727 - 43385824
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgaga 152  Q
    ||||||||| ||||||||   |||||||||||| ||| ||| ||||||  | ||||| ||||| ||||||  ||||||| ||||| |||||| |||||    
T  43385727 gtcatctcatttatatgtgtctcaacatctactgttgtatttaatgtggaactttaaatcacaattgacattttaacatatcttccttaagtgtgaga 43385824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 26531519 - 26531623
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    |||| |||| ||||||||| || ||||| | |||||||||  |||||||||||||||||  || |||  |||||||||||||||  ||||||  | ||||    
T  26531519 gacaccacatcttcacccataaccttaatatattagatatatgagtcatctcacttata--tttttctgcatctactattgcatctaatgtgaaacttta 26531616  T
Q  111 actcaca 117  Q
    |||||||    
T  26531617 actcaca 26531623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 1599808 - 1599546
Alignment:
Q  21 aacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacac 118  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1599808 aacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacac 1599709  T
Q  119 ttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacg 218  Q
    |||||||||||||||||||  |||||| |||||||||||||| | ||| ||||||||||||  |||||||||||| || ||||||||||||||   || |    
T  1599708 ttgacacattaacatctctctattaagcatgagactctctgtatctgctatccaccaccacataccacttccgctcccaaaaaatgttgaagcatatatg 1599609  T
Q  219 atatcaacattgagacttat-ggggagccaacacttgtgtgaatgacgacacattgcagaaagag 282  Q
    |||||| | ||| ||||||| |||||||||| ||||||||||||  |||||||||||||||||||    
T  1599608 atatcacctttgggacttatgggggagccaatacttgtgtgaat--cgacacattgcagaaagag 1599546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 301
Target Start/End: Complemental strand, 26894961 - 26894748
Alignment:
Q  87 tattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccac 186  Q
    |||||||| |||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||| || |||| ||| ||||||||||| |||||||    
T  26894961 tattgcatccaatgtgttattttaaatcacacttgatatattaacatctctccattaagtatgagactatccgtgtctgcaatccaccaccatgaaccac 26894862  T
Q  187 ttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagacttatgggg-agccaacacttgtgtgaatgacgacacattgcagaaagagtaa 285  Q
    |||| || ||| |||||||||||| || ||  ||||||  |||| ||||||||||| |||||||| |||||||||| || ||||||||||||||||| ||    
T  26894861 ttccactcccctaaaatgttgaagtggatattatatcattattgggacttatggggtagccaacagttgtgtgaat-ac-acacattgcagaaagagaaa 26894764  T
Q  286 tcacacaagtgagaat 301  Q
    |||||||| |||||||    
T  26894763 tcacacaaatgagaat 26894748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 29214239 - 29214433
Alignment:
Q  16 atcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaact 113  Q
    |||||| ||||| ||||| |||||||||| |||  |||||||||||||||||| ||||||||||||||  | || || ||| |||||||  |||||||||    
T  29214239 atcacatcttcatccaaagtcttaagacaataggtatatgagtcatctcacttgtatgttgttcaacaattgctttttcatacaatgtggaattttaact 29214338  T
Q  114 cacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaa 209  Q
     | |||| || | ||||||| |||||||||||| |||  ||||| ||||  | |||||||||||| ||||||| |||||| ||| | |||||||||    
T  29214339 taaacttaactcgttaacatatcttcattaagtgtgatgctctccgtgtgggtgatccaccaccaagaaccac-tccgctcccccacaatgttgaa 29214433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 31737206 - 31737288
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 131  Q
    |||||| |||| |||||| |||||||||||||||||||| |||||| |||||||  ||||||||||||| |||||||||||||    
T  31737206 atatgaatcatatcacttgtatgttgttcaacatctactcttgcatccaatgtgaaattttaactcacaattgacacattaac 31737288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 2976805 - 2976645
Alignment:
Q  29 ccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacaca 126  Q
    ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||||||||| | || ||| |||||||   |||||||||||||||||||||    
T  2976805 ccaaagtcttaagacatgaggtatatgtgtcatctcacttacatgttgttcaacatctattctttcatacaatgtgaagttttaactcacacttgacaca 2976706  T
Q  127 ttaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccact 187  Q
     ||| || |||| || |||| | |||||||| | ||| | |||| ||||| | ||||||||    
T  2976705 ataatatttctttatcaagtgttagactctccgcgtaagtgatctaccacaaagaaccact 2976645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 33350293 - 33350372
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||  | ||||| | ||||||||||||||    
T  33350293 atatgagtcatatcacttatatattgttcaacatttactattgcattcaatgtggaactttaaataacacttgacacatt 33350372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 7428479 - 7428572
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  7428479 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagt 7428572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 11554334 - 11554469
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| ||||  || |||||||| ||||||||||||| ||  || ||||||||||| |||||||||| |||| |||||  ||||| ||||||    
T  11554334 aatgagattgacaccacattttgacccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgt 11554433  T
Q  102 gttattttaactcacacttgacacattaacatctct 137  Q
       |  ||||||||||| ||||||||||||||||||    
T  11554434 agaaggttaactcacacatgacacattaacatctct 11554469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 21984261 - 21984182
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  21984261 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 21984182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 21988918 - 21988808
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | |||||||||||||||||| |||||||| ||| | |||||| |    
T  21988918 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgt 21988819  T
Q  149 gagactctctg 159  Q
    || ||||||||    
T  21988818 gatactctctg 21988808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 23410088 - 23410202
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  23410088 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 23410185  T
Q  162 tatgcgatccaccacca 178  Q
    |||| |||| |||||||    
T  23410186 tatgagatctaccacca 23410202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 4852944 - 4852809
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| ||||  || | |||||||||||||||||| | ||  || ||||||||||| |||||||||| |||| |||||  ||||| ||||||    
T  4852944 aatgagattgacaccacattttgatccaaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgt 4852845  T
Q  102 gttattttaactcacacttgacacattaacatctct 137  Q
       |  ||||||||||| ||||||||||||||||||    
T  4852844 agaaggttaactcacacatgacacattaacatctct 4852809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 4031618 - 4031518
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagact 154  Q
    ||||| |||||||||||||| |||||||| ||| ||  ||  ||||||  |  |||||||||  ||||||||||||||||||||| ||||||||||||||    
T  4031618 gtcatatcacttatatgttgctcaacatccactcttatatctaatgtggaaccttaactcac--ttgacacattaacatctcttccttaagtatgagact 4031521  T
Q  155 ctc 157  Q
    |||    
T  4031520 ctc 4031518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 15878925 - 15878847
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||| ||||||||||||||| ||||||| || ||| |||||| | |  |||||||||| |||||||||||||||    
T  15878925 gtcatctcaattatatgttgttcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 15878847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 16279074 - 16279167
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||| ||||||||||||||||||||| | ||||||||    
T  16279074 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaacttacacttgacacattaacatctgtccattaagt 16279167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 24175141 - 24175021
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagatatgag--tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    ||||||||| ||||||| ||| |||||| ||||||| ||| ||  ||||||||||||||||||| ||||||| || |||||||| || |     ||||||    
T  24175141 gacatcacatcttcaccaaaagtcttaa-acattaggtataagggtcatctcacttatatgttgctcaacatatattattgcatacattactgaatttta 24175043  T
Q  111 actcacacttgacacattaaca 132  Q
    | ||||||||||||||||||||    
T  24175042 attcacacttgacacattaaca 24175021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 20872556 - 20872442
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    |||||||||| |  |||||||||||| || ||| |||||||  | ||||||||||||||||||| ||||||| ||| | | ||||| |||||||||||      
T  20872556 cacttatatgctactcaacatctactcttacatccaatgtg--actttaactcacacttgacacgttaacatttctccctcaagtacgagactctctgca 20872459  T
Q  162 tatgcgatccaccacca 178  Q
    |||| |||| |||||||    
T  20872458 tatgagatctaccacca 20872442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 19660319 - 19660426
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    ||||||| ||| ||| ||||||||||||||||| ||||| ||| |||||||| |  | |||||||||||||| ||||| || ||||  |   ||||||||    
T  19660319 atatgaggcatatcatttatatgttgttcaacaactactcttggattcaatgaggaactttaactcacacttaacacactatcatccatctcttaagtat 19660418  T
Q  149 gagactct 156  Q
    ||||||||    
T  19660419 gagactct 19660426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 24398047 - 24397965
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctacta 88  Q
    |||| ||||||||  ||||||||||||||||| ||||||||  |||| |||||||||| |||||||||| |||| || |||||    
T  24398047 agattgacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatacta 24397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 9449581 - 9449690
Alignment:
Q  31 aaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||   ||||||||| ||||||||||||||| ||||| || ||||  | ||| ||||||   ||  ||||||||||||||||| ||    
T  9449581 aaaatcttaaggcattatgcatatgagtcttctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcacacttgacacgtt 9449680  T
Q  129 aacatctctt 138  Q
    ||||||||||    
T  9449681 aacatctctt 9449690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 26895011 - 26894975
Alignment:
Q  16 atcacaacttcacccaaaatcttaagacattagatat 52  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26895011 atcacaacttcacccaaaatcttatgacattagatat 26894975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 26597589 - 26597684
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||| |||||| ||||||||| |   |||| |||| |||| | ||||||   |||||| ||||||||||||| |||||||||||| ||||||||    
T  26597589 atatgagtaatctcatttatatgttctg--acatatacttttgcttacaatgtagaattttagctcacacttgacatattaacatctctccattaagt 26597684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 28365786 - 28365724
Alignment:
Q  84 tactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    ||||||||||| |||| |   ||||||||| ||||||||||||||||||||| | ||||||||    
T  28365786 tactattgcatacaatataaaattttaacttacacttgacacattaacatctgtccattaagt 28365724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 4852020 - 4851983
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctac 86  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  4852020 atatgagtcatctcacgtatatgttattcaacatctac 4851983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 11555259 - 11555296
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctac 86  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  11555259 atatgagtcatctcacgtatatgttattcaacatctac 11555296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 27436867 - 27436916
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
    |||||||| ||||||||||||| |||||||| |||||||| | |||||||    
T  27436867 tttaactcgcacttgacacattgacatctctacattaagtttcagactct 27436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 1599951 - 1599848
Alignment:
Q  30 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| |||||   |||||||||| |||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  1599951 caaaaccttaagacattggatatattagtcatctcatttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 1599852  T
Q  128 taac 131  Q
    ||||    
T  1599851 taac 1599848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 20874231 - 20874179
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
    ||||||||||| ||||||||||||||||||| | |||||  ||| ||||||||    
T  20874231 tttaactcacatttgacacattaacatctctcccttaagcgtgaaactctctg 20874179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 50164 - 50421
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| ||||||||||||||||||||| |||| ||||||| |||||  |||| |||||  ||||||||||||| |||||||||||||||||||| ||||    
T  50164 tgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactattgcattcaacgtgt 50263  T
Q  104 tattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaat 203  Q
    |||||||||| |||||||||| |||||  ||||| ||||||||| |||||||||| |||  |||||||||||| |||||||||||| ||| || |||||     
T  50264 tattttaactgacacttgacatattaaattctctccattaagtacgagactctctatgtccgcgatccaccactacgaaccacttctgctcccaaaaaac 50363  T
Q  204 gttgaagcgggtacgatatcaacattgagacttatggggagccaacacttgtgtgaat 261  Q
    |||||||||| || |||||||  |||  ||||| | | ||||||||||||||||||||    
T  50364 gttgaagcggatatgatatcattattaggacttttcgagagccaacacttgtgtgaat 50421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 50331915 - 50332060
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  50331915 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactc 50332014  T
Q  115 acacttgacacattaacatctcttcattaagtatgagactctctgt 160  Q
    |||||||||||||||||||||||  |||||| |||| |||||||||    
T  50332015 acacttgacacattaacatctctctattaagcatgaaactctctgt 50332060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 50 - 307
Target Start/End: Complemental strand, 36096207 - 36095949
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagta 147  Q
    |||||||||||||| | ||||||| ||||| ||| | |||   ||||||||||| |||||||||| ||||||||||||||||  ||||||  ||||| ||    
T  36096207 tatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattattttaacccacacttgacacattacaatctctcaattaaata 36096108  T
Q  148 tgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagcc 246  Q
     || |||||  ||||  |||||||||||||||||| |||||||||| ||||||||||||||||||  || ||||||| ||||| ||| ||  |||||  |    
T  36096107 cgatactcttcgtgtccgcgatccaccaccacgaagcacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacatacgggggatac 36096008  T
Q  247 aacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 307  Q
    ||||||||||||| |  |||||||||||||||| |  || |||| | ||||||||||||||    
T  36096007 aacacttgtgtgatt--cgacacattgcagaaaaaacaaccacaaaggtgagaatgatgtc 36095949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 50332062 - 50332173
Alignment:
Q  194 tcccaaaaatgttgaagcgggtacgatatcaacattgagacttat-ggggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacaca 292  Q
    |||||||||||||||||| | || ||||||| ||||| ||||||| ||||||||||| |||||||||||  || |||||||||||||||| ||||||||     
T  50332062 tcccaaaaatgttgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaat--cgtcacattgcagaaagagcaatcacacg 50332159  T
Q  293 agtgagaatgatgt 306  Q
    ||||| ||||||||    
T  50332160 agtgataatgatgt 50332173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 40056649 - 40056502
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||  ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  40056649 gacaccacatcttcaccataaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 40056550  T
Q  112 ctcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
     ||||||||||||| ||||||||| |   | |||||||||||||||||    
T  40056549 atcacacttgacacgttaacatctttctctcaagtatgagactctctg 40056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 20934988 - 20935084
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    ||||||||||||||||||| |||||  ||| ||||||||||||||| |||| |   |||||||||||||| |||||||||||||||||| ||||||||    
T  20934988 atatgagtcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacctgacacattaacatctctccattaagt 20935084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 12746101 - 12746241
Alignment:
Q  165 gcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagactta-tggggagccaacacttgtgtgaatga 263  Q
    ||||||||||||||| || || |||||||  |||||||||||||||||  || ||||||| ||||| || |||  |||||| |||||||||||||| |      
T  12746101 gcgatccaccaccacaaagcatttccgctctccaaaaatgttgaagcgtatatgatatcaccattgggaattacaggggagacaacacttgtgtgatt-- 12746198  T
Q  264 cgacacattgcagaaagagtaatcacacaagtgagaatgatgtc 307  Q
    ||| |||||||||| | || ||||||||||||||||||||||||    
T  12746199 cgatacattgcagaga-agcaatcacacaagtgagaatgatgtc 12746241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 14044376 - 14044290
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||| ||||| ||||||| |||||||||||||| ||||||||||| |||| ||  | ||||| |||||||||||||||||||||||    
T  14044376 atatgggtcatatcacttaaatgttgttcaacatttactattgcatccaatatggaactttaaatcacacttgacacattaacatct 14044290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 17764216 - 17764120
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||| ||||||||||||||||| ||| ||| |||| | || | |||||||  ||||||||||||||||| ||||||||||||||| ||||||||    
T  17764216 atatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacattaacatctctccattaagt 17764120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 19065536 - 19065440
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||| ||||||||||||||||| ||| ||| |||| | || | |||||||  ||||||||||||||||| ||||||||||||||| ||||||||    
T  19065536 atatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacattaacatctctccattaagt 19065440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 30171174 - 30171283
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | |||||||||||||| || ||| |   | ||||||    
T  30171174 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacattgacctctttatctcaagtat 30171273  T
Q  149 gagactctct 158  Q
    ||||||||||    
T  30171274 gagactctct 30171283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 32976462 - 32976558
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    ||||||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||| |||||||||||||| ||||||||    
T  32976462 atatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgatacattaacatctctccattaagt 32976558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 19817404 - 19817535
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  19817404 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 19817501  T
Q  162 tatgcgatccaccaccacgaaccacttccgcttc 195  Q
    |||| |||| |||||||  ||||| ||| |||||    
T  19817502 tatgagatctaccaccataaaccaattctgcttc 19817535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 20779644 - 20779566
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| ||||||| || ||| || ||| | || |||||||||| |||||||||||||||    
T  20779644 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 20779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 42400377 - 42400470
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||| |||||||||||||||||| ||||||||    
T  42400377 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacgtgacacattaacatctctccattaagt 42400470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 10020227 - 10020152
Alignment:
Q  26 cacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaat 99  Q
    ||||||||||||||||| ||||   ||||||||||||||||||||||||||||||| ||||||  || ||||||||    
T  10020227 cacccaaaatcttaagatattaagtatatgagtcatctcacttatatgttgttcaaaatctacccttccattcaat 10020152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 25225304 - 25225403
Alignment:
Q  37 ttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatc 134  Q
    ||||||||||||  ||||| |||||| ||||| ||| || |||| |||||||||||||||||||||||  | |||||||||||  ||||| |||||||||    
T  25225304 ttaagacattaggtatatgggtcatcacacttgtatctttttcaccatctactattgcattcaatgtggaactttaactcacaaatgacatattaacatc 25225403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 20788532 - 20788453
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| || |||||||  | ||||| | ||||||||||||||    
T  20788532 atatgagtcatatcacttatatattgttcaacatttactattgaatccaatgtggaactttaaataacacttgacacatt 20788453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 52753117 - 52753015
Alignment:
Q  37 ttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatc 134  Q
    ||||||||||||||  || |||| || |||||||||||||||||| || ||||||| |||||||| | | ||||||||||| || | | |||||||||||    
T  52753117 ttaagacattagatgtattagtcttcgcacttatatgttgttcaatatatactatttcattcaatttataattttaactcatacataatacattaacatc 52753018  T
Q  135 tct 137  Q
    |||    
T  52753017 tct 52753015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 39183183 - 39183069
Alignment:
Q  18 cacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcac 116  Q
    |||| |||||||| ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||| |   | ||||| ||||    
T  39183183 cacatcttcaccctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatatagaactttaaatcac 39183084  T
Q  117 acttgacacattaac 131  Q
    ||||||||| |||||    
T  39183083 acttgacacgttaac 39183069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 39187401 - 39187291
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    |||| |||||||||| |||||| ||||||||||  |||| ||||||| ||  |   | |||||||||||||||||| ||||| |||||| | |||||| |    
T  39187401 atatcagtcatctcatttatattttgttcaacacatacttttgcatttaacatagaactttaactcacacttgacatattaaaatctctcccttaagtgt 39187302  T
Q  149 gagactctctg 159  Q
    |||||||||||    
T  39187301 gagactctctg 39187291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 30169901 - 30170006
Alignment:
Q  54 agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagac 153  Q
    |||||||||| |||||| ||||||||||| |||| || |||||||  |   | |||||||||||||||||| |||||||| ||| | |||||| ||| ||    
T  30169901 agtcatctcatttatattttgttcaacatatacttttacattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgtgatac 30170000  T
Q  154 tctctg 159  Q
    ||||||    
T  30170001 tctctg 30170006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 432046 - 431968
Alignment:
Q  67 atatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaag 145  Q
    |||||||  ||||||| |||| |||||| ||||||   ||||||||||||| |||||||||||| |||||| |||||||    
T  432046 atatgtttctcaacatatactcttgcatccaatgtcgaattttaactcacaattgacacattaatatctctccattaag 431968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 32970436 - 32970533
Alignment:
Q  38 taagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||  ||||| |||||||||||||||| || |||| |||||||| ||||||  ||||||  | ||| ||||||| |||||| ||||||||    
T  32970436 taagacattaggtatatgggtcatctcacttatatatttttcagcatctactcttgcatctaatgtgaaactttcactcacatttgacatattaacat 32970533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 34849788 - 34849897
Alignment:
Q  31 aaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    |||||||||||||||||  ||  | ||| ||||||||||||| ||  ||| ||||||| |||| ||||||||||  | ||||| |||||  |||||||||    
T  34849788 aaaatcttaagacattatgtacataagttatctcacttatattttcctcaccatctaccattgaattcaatgtgaaactttaattcacatatgacacatt 34849887  T
Q  129 aacatctctt 138  Q
    ||||||||||    
T  34849888 aacatctctt 34849897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 2251056 - 2250975
Alignment:
Q  57 catctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 138  Q
    ||||||||||||||||||||||| || ||  ||| ||| |||| |    |||||||||| ||||||||||||||||||||||    
T  2251056 catctcacttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacatctctt 2250975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 14045470 - 14045389
Alignment:
Q  57 catctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 138  Q
    |||||||||||||||||||||||  | ||| ||| ||| |||| |   ||||||||||||||| |||||||||||| |||||    
T  14045470 catctcacttatatgttgttcaaattttaccattccatccaatataaaattttaactcacactcgacacattaacacctctt 14045389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 9611703 - 9611832
Alignment:
Q  30 caaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||||| |||  | ||||||||||| | || ||| | || |||||||||||||| ||| ||   | ||||| |||||| ||||||||    
T  9611703 caaaaccttaagacattaggtatacgggtcatctcactaacattttgcttaaaatctactattgcatccaacgtagaagtttaaatcacacatgacacat 9611802  T
Q  128 ta--acatctcttcattaagtatgagactct 156  Q
    ||  |||||||||| ||||||||||||||||    
T  9611803 taacacatctcttc-ttaagtatgagactct 9611832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 50241569 - 50241485
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| ||||  || |||| ||  || || | |   |||||||||||||||||||||||||||||    
T  50241569 atatgagtcatctcacttatatgttattcataatttactcttatatccactatagaattttaactcacacttgacacattaacat 50241485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 6087838 - 6087930
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcatta 143  Q
    |||||||| ||  ||||||||||||| |||||||||| | |||||| || ||||  |||||||||  ||||||| | ||||| ||||||||||||    
T  6087838 atatgagttatgccacttatatgttgctcaacatctaatcttgcatacattgtggaattttaact--cacttgagatattaaaatctcttcatta 6087930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 12744020 - 12744055
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12744020 gtcatctcacttatatgttattcaacatctactatt 12744055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 37835402 - 37835479
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctac 86  Q
    ||||||||| |||| |||||  ||||||| | |||   || |||||||||||||||||| |||||||||||||||||||    
T  37835402 agatggacaccacatcttcaatcaaaatcattagaacatatatatgagtcatctcactt-tatgttgttcaacatctac 37835479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 50489 - 50413
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaac 80  Q
    |||||| |||| |||| || || || ||| |||||||||||||  ||||||||||| |||||||| |||||||||||    
T  50489 tgagattgacaccacatctccatcccaaaccttaagacattaggtatatgagtcatatcacttatttgttgttcaac 50413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 44904897 - 44904856
Alignment:
Q  115 acacttgacacattaacatctcttcattaagtatgagactct 156  Q
    |||||||| |||||||||||||||| | ||||||||||||||    
T  44904897 acacttgatacattaacatctcttcctcaagtatgagactct 44904856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 14647 - 14522
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  14647 aatgagattgacatcacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgttcaacatctactattgcattcaatgt 14548  T
Q  102 gttattttaactcacacttgacacat 127  Q
    ||||||||||||||||||||| ||||    
T  14547 gttattttaactcacacttgatacat 14522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 14503 - 14373
Alignment:
Q  168 atccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtacgatatcaacattgagacttatgg-ggagccaacacttgtgtgaatgacga 266  Q
    |||||||| |||||||||| |||||| | ||||||||||||||||| || ||||||| |||| |||||||||| |||||||||||||||||||||  | |    
T  14503 atccaccatcacgaaccacatccgctcctcaaaaatgttgaagcggatatgatatcaccattaagacttatggaggagccaacacttgtgtgaat--caa 14406  T
Q  267 cacattgcagaaagagtaatcacacaagtgaga 299  Q
    ||||||| |||||| | ||||||||||||||||    
T  14405 cacattgaagaaagggcaatcacacaagtgaga 14373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 47112 - 47277
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagatatgagt--catctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    |||| |||| ||||||||||| ||||||||||| || |||| ||  |||||||||||||||||||||||||||||||||| ||| ||| |||  | ||||    
T  47112 gacaccacatcttcacccaaagtcttaagacatgaggtatgtgtgtcatctcacttatatgttgttcaacatctactattccatacaacgtgaaacttta 47211  T
Q  111 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccac 176  Q
    |||||||||||| |||  ||||| |||  || || | | |||||||||||||| | ||||||||||    
T  47212 actcacacttgatacaacaacatttctctatcaaatgttagactctctgtgtaagtgatccaccac 47277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 41449 - 41512
Alignment:
Q  59 tctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttga 122  Q
    |||||||||||| |||||||||||| ||| || ||| ||| |||  ||||||||||||||||||    
T  41449 tctcacttatatattgttcaacatcaactcttccatacaacgtgaaattttaactcacacttga 41512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 38788897 - 38789060
Alignment:
Q  14 acatcacaacttcacccaaaatcttaagacatta-gatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaac 112  Q
    |||||||| ||||| ||||| ||| ||| ||||| ||||||  |||| | | |||||||||| |||  ||||||| |||||| |||||||  ||||||||    
T  38788897 acatcacaccttcatccaaagtctcaaggcattacgatatggatcatattatttatatgttgctcat-atctactcttgcatacaatgtgaaattttaac 38788995  T
Q  113 tcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccacc 177  Q
    | |||||| |||||||||||||||| |||||||| | |||||||| |||| || |||||||||||    
T  38788996 ttacacttaacacattaacatctctccattaagtgtcagactctccgtgtttgtgatccaccacc 38789060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 2452221 - 2452101
Alignment:
Q  36 cttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||| |||||| | |||||||   |||||||||||| ||| |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| ||||    
T  2452221 cttaaggcattaggtttgagtcaaaacacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatct 2452123  T
Q  136 cttcattaagtatgagactctc 157  Q
    ||||   |||||||||||||||    
T  2452122 cttctccaagtatgagactctc 2452101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 43989777 - 43989681
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||| |||||||||||| |||||  ||| ||||||||||||||| |||| |   |||||||||||||||||||||||||||||||||  |||||||    
T  43989777 atatgaatcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagt 43989681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 17510236 - 17510374
Alignment:
Q  76 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 175  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17510236 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17510335  T
Q  176 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 214  Q
    ||| |||||||| || || ||| ||||||||||| ||||    
T  17510336 ccaagaaccactcccactcccctaaaatgttgaatcggg 17510374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 17542978 - 17542840
Alignment:
Q  76 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 175  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17542978 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17542879  T
Q  176 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 214  Q
    ||| |||||||| || || ||| ||||||||||| ||||    
T  17542878 ccaagaaccactcccactcccctaaaatgttgaatcggg 17542840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 29912714 - 29912532
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    |||| |||| |||||||| |||||||| || |||||  |||||  ||||  ||||||||||||  |||||||||||| || ||| |||||||  | ||||    
T  29912714 gacaacacatcttcaccccaaatcttatgaaattaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtg--acttta 29912617  T
Q  111 actcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccaccaccacgaaccacttccgcttc 195  Q
    ||||||||||||| ||||||||| |||   | ||||| |||||||||||  |||| |||| |||||||  ||||| ||| |||||    
T  29912616 actcacacttgacgcattaacatttctctctcaagtacgagactctctgcatatgagatctaccaccataaaccaattctgcttc 29912532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 4120006 - 4120098
Alignment:
Q  60 ctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgaga 152  Q
    ||||||||||||||| |||||||| ||| ||| || |||||||  ||||||||| ||||||||||| |||  |||||| |||||||| |||||    
T  4120006 ctcacttatatgttgctcaacatccacttttgaatccaatgtgaaattttaactaacacttgacacgttagtatctctccattaagtgtgaga 4120098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 6677088 - 6677207
Alignment:
Q  16 atcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaact 113  Q
    |||||| ||||| | |||| ||||||||||| |  |||||||||||||||| |||||||||||||| || |||  || |||||||| |   |||||||||    
T  6677088 atcacatcttcatctaaaaccttaagacatttggtatatgagtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaattttaact 6677187  T
Q  114 cacacttgacacattaacat 133  Q
    ||||||| ||| ||||||||    
T  6677188 cacacttaacaaattaacat 6677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 45406737 - 45406685
Alignment:
Q  105 attttaactcacacttgacacattaacatctcttcattaagtatgagactctc 157  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  45406737 attttaactcacaattgacacattaacatttctccattaagtatgagactctc 45406685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 17474752 - 17474890
Alignment:
Q  76 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 175  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17474752 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17474851  T
Q  176 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 214  Q
    ||| |||||||| || |  ||| ||||||||||| ||||    
T  17474852 ccaagaaccactcccacacccctaaaatgttgaatcggg 17474890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 17578462 - 17578324
Alignment:
Q  76 tcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatgcgatccacca 175  Q
    |||||||||||| || |||  ||||||  | ||||||||| | ||||||||||||||||||| || ||||| | ||||||| ||||  || |||| ||||    
T  17578462 tcaacatctactcttacataaaatgtgaaactttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgacca 17578363  T
Q  176 ccacgaaccacttccgcttcccaaaaatgttgaagcggg 214  Q
    ||| |||||||| || |  ||| ||||||||||| ||||    
T  17578362 ccaagaaccactcccacacccctaaaatgttgaatcggg 17578324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 42078960 - 42079050
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgtt--attttaactcacacttgacacattaacatctcttcattaa 144  Q
    |||||||||||| |||||| |||| ||||||| ||||||  ||||| |   | |||||||||||| |||||||||||||||||||| ||||    
T  42078960 tcatctcacttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatctcttccttaa 42079050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 2928038 - 2927976
Alignment:
Q  32 aaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgc 92  Q
    |||||||||||||||||  ||||| |||  || ||||||||||||||||||||||||| ||||    
T  2928038 aaatcttaagacattagttatatgggtctcctaacttatatgttgttcaacatctacttttgc 2927976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 4110362 - 4110437
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||| |||||| |||| || ||||||||||||||||||  || |||||| || |  ||||||||||||||    
T  4110362 tcatctcacttacatgttgctcaatatatactattgcattcaatgtagtagtttaacccata--tgacacattaacat 4110437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 24708517 - 24708451
Alignment:
Q  63 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatta 129  Q
    |||||||||||| ||||||| |||| || ||| |||||| | ||||||||||| | |||||||||||    
T  24708517 acttatatgttgctcaacatatactcttacatacaatgtataattttaactcataattgacacatta 24708451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 26374611 - 26374649
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  26374611 tgagtcatctcacttatatcttattcaacatctactatt 26374649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 15464394 - 15464443
Alignment:
Q  109 taactcacacttgacacattaacatctcttcattaagtatgagactctct 158  Q
    |||||||||| |||||||||| ||||||| | |||||| |||||||||||    
T  15464394 taactcacacatgacacattagcatctctaccttaagtgtgagactctct 15464443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 45610345 - 45610390
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatg 100  Q
    ||||||| |||||||||||||||| |||||||| || |||||||||    
T  45610345 gtcatctaacttatatgttgttcaccatctactttttcattcaatg 45610390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 5785971 - 5786019
Alignment:
Q  109 taactcacacttgacacattaacatctcttcattaagtatgagactctc 157  Q
    ||||||||||||||||||||||| | ||| | || ||||||||||||||    
T  5785971 taactcacacttgacacattaacttatctcccttcagtatgagactctc 5786019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 20181468 - 20181326
Alignment:
Q  14 acatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||||||| |||||||||||| ||||   |||||| |||  | ||||| | |||| |||||| ||||| ||||||| ||| || |||| |   | |||||    
T  20181468 acatcacatcttcacccaaaacctta---cattaggtatacgggtcatattacttgtatgtttttcaatatctactcttgaatccaatatagaactttaa 20181372  T
Q  112 ctcacacttgacacattaacatctcttcattaagtatgagactctc 157  Q
     ||||| ||||  ||||||||||||| | |||||||||||||||||    
T  20181371 atcacatttgatgcattaacatctctcctttaagtatgagactctc 20181326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 29168 - 29268
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 155  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||  | ||||||||||| |||| |||||||||| ||| | |||| | ||||||||    
T  29168 tcatctcacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacatatctcccttaactgtgagactc 29267  T
Q  156 t 156  Q
    |    
T  29268 t 29268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 12687 - 12571
Alignment:
Q  24 ttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttg 121  Q
    ||||||||||||||||||  || || |||  | ||||||||||||||||||||||||| || ||||||| ||| |||||| | | ||||||||| ||||     
T  12687 ttcacccaaaatcttaaggtatcaggtatacgtgtcatctcacttatatgttgttcaaaatatactattccatccaatgtataactttaactcaaacttc 12588  T
Q  122 acacattaacatctctt 138  Q
    | |||||||||||||||    
T  12587 atacattaacatctctt 12571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 1942 - 1847
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    ||||||| |||||||||| |||||  ||| ||||||||||||||| |||| |   |||||||||||||||||||||||||||||||||  |||||||    
T  1942 tatgagttatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagt 1847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 30970 - 30812
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||  ||||||||||||||||| ||||||||  |||| |||||||||| |||||||||| |||| || |||||| |||   |||||   |    
T  30970 agattgacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactatcgcacctaatgt-aga 30872  T
Q  106 ttttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgtatg 165  Q
      ||||||||||| ||||||||||| ||||||   ||||||||| |||||| ||||||||    
T  30871 agttaactcacacatgacacattaatatctctctcttaagtatgggactctttgtgtatg 30812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 6424 - 6506
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 137  Q
    ||||||||||||||||||||||||||||||| | |||||| |||| ||  | ||||||||||| |||| ||||||||| ||||    
T  6424 gtcatctcacttatatgttgttcaacatctatttttgcatccaatatggaactttaactcacatttgatacattaacacctct 6506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 826 - 915
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 138  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   | ||| ||||||||||||||||||||||||||||    
T  826 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaacttttactcacacttgacacattaacatctctt 915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 7537 - 7668
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| |||||||||||   ||| ||||||||||||| |||    ||||||| |||||||||||| |||| ||||||| || ||| ||||||    
T  7537 aatgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgt 7636  T
Q  102 gttattttaactcacacttgacacattaacat 133  Q
     | |  ||||||| || |||||||||||||||    
T  7637 ataacgttaactcgcatttgacacattaacat 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 2091 - 2129
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  2091 atatgagtcatataacttatatgttgttcaacatctact 2129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 279 - 371
Alignment:
Q  53 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    |||||||||| |||| |||||  ||| ||||||||||||||| |||| |   ||||||||||||||||| ||||||||||||||| ||||||||    
T  279 gagtcatctcgcttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgccacattaacatctctccattaagt 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 5233 - 5137
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtgt 162  Q
    |||||||||| ||| |||||||| |||||| |||||||  ||||||||| |||||| | |||||||||||||| |||||||| | |||||||| ||||    
T  5233 ttatatgttgctca-catctactcttgcatacaatgtgaaattttaacttacacttaaaacattaacatctctccattaagtgtcagactctccgtgt 5137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 2376 - 2229
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactatt---gcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagt 146  Q
    ||||| |||||||| || ||||||| |||||||||| || |   |||| |||||||  ||||||||| ||||||||||||||||||| |||||||||||     
T  2376 tatgaatcatctcatttgtatgttgctcaacatctattactcctgcatccaatgtggaattttaacttacacttgacacattaacatatcttcattaagg 2277  T
Q  147 atgagactctctgtgtatgcgatccaccaccacgaaccacttccgctt 194  Q
       || ||||| |||| || |||||| ||||| ||| |||| ||||||    
T  2276 tcaaggctctccgtgtgtgtgatccaacaccaagaatcactcccgctt 2229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 37129 - 37016
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtat 148  Q
    |||||| |||||||||||||||||| ||||| ||||||| ||  || || | |   ||||||||||||||||||||||||||||||||||  | |||| |    
T  37129 atatgaatcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagttt 37030  T
Q  149 gagactctctgtgt 162  Q
    |  |||||||||||    
T  37029 gcaactctctgtgt 37016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 35492 - 35454
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  35492 atatgagtcatataacttatatgttgttcaacatctact 35454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 1457 - 1376
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaa 130  Q
    ||||| |||||||||||||||| || ||||| ||||| | || ||||||||||   |  || ||||||||||||||||||||    
T  1457 atatgggtcatctcacttatatattattcaaaatctattcttccattcaatgttgaacattcactcacacttgacacattaa 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 31023 - 31137
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||||| ||| | | ||||| |||||||||||      
T  31023 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacatttctccctcaagtacgagactctctgca 31120  T
Q  162 tatgcgatccaccacca 178  Q
    |||| |||| |||||||    
T  31121 tatgagatctaccacca 31137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 188 - 316
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| || || || ||| |||||||||||||||||  ||||||| |||||||| ||||||||||||  |||| |||||  ||||| |     
T  188 tgagattgacaccacatctccatcctaaaccttaagacattagatatatgagtcatatcacttatttgttgttcaacagttactcttgcagccaatgcga 287  T
Q  104 tattttaactcacacttgacacattaacat 133  Q
     |  ||||||||||||||||||||||||||    
T  288 ga-cttaactcacacttgacacattaacat 316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 12554 - 12654
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgtt--attttaactcacacttgacacattaacatctcttcattaagtatgagac 153  Q
    |||||||||||| |||||| |||| || |||| ||||||  ||||| |   | |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  12554 tcatctcacttacatgttgctcaatatttactcttgcatctaatgtatagaaatttaactcacacatgacacattaacatctcttccttaagtgtgagac 12653  T
Q  154 t 154  Q
    |    
T  12654 t 12654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 18450 - 18539
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctt 138  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   |||||||||||||||||||  |||||||||||||    
T  18450 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctctt 18539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 19707 - 19745
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  19707 atatgagtcatataacttatatgttgttcaacatctact 19745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 19862 - 19976
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactctctgtg 161  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  | ||||| || |||||||||||||||||| ||| | | ||||| |||||||||||      
T  19862 cacttatatgttactcaatatctactcttacatccaatgtg--actttaattcgcacttgacacattaacatttctccctcaagtacgagactctctgca 19959  T
Q  162 tatgcgatccaccacca 178  Q
    |||| |||| |||||||    
T  19960 tatgagatctaccacca 19976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 45618 - 45671
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttg 74  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| ||||||||||    
T  45618 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttg 45671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 153169 - 153116
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttg 74  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| ||||||||||    
T  153169 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttg 153116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 128292 - 128389
Alignment:
Q  58 atctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctcttcattaagtatgagactc 155  Q
    ||||||||||||||||  |||| || ||||| ||||  |||| ||  |||||||||||||| |||||||| ||||| | ||| |||| | ||||||||    
T  128292 atctcacttatatgttactcaatatatactactgcagccaatatggaattttaactcacacatgacacataaacatatattccttaaatgtgagactc 128389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 50495 - 50446
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactct 156  Q
    |||||||| ||||||||||||| |||||||| |||||||| | |||||||    
T  50495 tttaactcgcacttgacacattgacatctctacattaagtttcagactct 50446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1819 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1819
Description:

Target: scaffold1819; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 179 - 223
Alignment:
Q  36 cttaagacattagatatgagtcatctcacttatatgttgttcaac 80  Q
    |||||||||||  || |||||||||||||||||||||| ||||||    
T  179 cttaagacatttaatttgagtcatctcacttatatgttattcaac 223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 562 - 510
Alignment:
Q  107 tttaactcacacttgacacattaacatctcttcattaagtatgagactctctg 159  Q
    ||||||||||| ||||||||||||||||||| | |||||  ||| ||||||||    
T  562 tttaactcacatttgacacattaacatctctcccttaagcgtgaaactctctg 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1104 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1104
Description:

Target: scaffold1104; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 1701 - 1745
Alignment:
Q  36 cttaagacattagatatgagtcatctcacttatatgttgttcaac 80  Q
    |||||||||||  || |||||||||||||||||||||| ||||||    
T  1701 cttaagacatttaatttgagtcatctcacttatatgttattcaac 1745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 22749 - 22806
Alignment:
Q  241 ggagccaacacttgtgtgaatgacgacacattgcagaaagagtaatcacacaagtgagaa 300  Q
    |||||||||| | ||||||||  ||| |||||| |||||||||||||| |||||||||||    
T  22749 ggagccaacagtggtgtgaat--cgatacattggagaaagagtaatcaaacaagtgagaa 22806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University