View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_2 (Length: 676)
Name: NF6899_low_2
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 87 - 670
Target Start/End: Complemental strand, 46009149 - 46008566
Alignment:
| Q |
87 |
gtgaagattgaaataattggtacctgtttttgagctggaagagaagggtgtgttttgagatggagaagatttgggacattgttgttagaaattggatgag |
186 |
Q |
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| T |
46009149 |
gtgaagattgaaataattggtacctgtttttgagctggaagagaaaggtgtgttttgagatggagaagatttgggacattgttgttagaaattggatgag |
46009050 |
T |
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| Q |
187 |
ttctcttgctattggttttgatatcactagctctagtggttatgaatgattcttcttgcttgtttctgattgatgatgatttctgaggaggcttgtttct |
286 |
Q |
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| T |
46009049 |
ttctcttgctattggttttgatatcactagctctagtggttatgaatgattcttcttgcttgtttctgattgatgatgatttctgaggaggcttgtttct |
46008950 |
T |
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| Q |
287 |
gtttatccgtggactcaaattcccatgtgctgttttcttgcattttgggaaagattttttgtcctccttctctgacattgcttgtgtttgtggctttgtt |
386 |
Q |
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| T |
46008949 |
gtttatccgtggactcaaattcccatgtgctgttttcttgcattttgggaaagattttttgtcctccttctctgacattgcttgtgtttgtggctttgtt |
46008850 |
T |
|
| Q |
387 |
gaaactcttgaaacttgtgcttcaatgttgactgcaggtggtggtgatgattgttttagtacttgatgtgtattttggtctcttggagtagttgttggtg |
486 |
Q |
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| T |
46008849 |
gaaactcttgaaacttgtgcttcaatgttgactgcaggtggtggtgatgattgttttagtacttgatgtgtattttggtctcttggagtagttgttggtg |
46008750 |
T |
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| Q |
487 |
aatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttgagggtacttttccttggtttgattcatctaatggtttaag |
586 |
Q |
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| T |
46008749 |
aatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttgagggtacttttccttgatttgattcatctaatggtttaag |
46008650 |
T |
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| Q |
587 |
agctttcttgaatttgatttgagcaacaaaatcttctttcgctttttcttgttctctgtttttcactgtgttggtgatgtccat |
670 |
Q |
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| T |
46008649 |
agctttcttgaatttgatttgagcaacaaaatcttctttcactttttcttgttctctgtttttcactgtgttggtgatgtccat |
46008566 |
T |
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