View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_22 (Length: 293)
Name: NF6899_low_22
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 42823632 - 42823374
Alignment:
| Q |
15 |
atatataagaagggagtgaaatgaaaaggctataacacaagtcaagtgaatcacactagcttgtttgttattcccaaaaagatgactgtttaagattttg |
114 |
Q |
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| T |
42823632 |
atatataagaagggagtgaaatgaaaaggctataacacaagt-----gaatcacactagcttgtttgttattcccaaaaagatgactgtttaatattttg |
42823538 |
T |
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| Q |
115 |
ctttacaaacacacaagtgatcaacaacttgaacaagtttcaccttcatttgacaactcctaagactataagactagtctgttttctccactgcctataa |
214 |
Q |
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| T |
42823537 |
ctttacaaacacacaagtgatcaacaacttgaacaagtttcaccttcatttgacaacttctaagactataagactagtctgttttctccactgcctat-- |
42823440 |
T |
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| Q |
215 |
caatcaataacattggatggatttcttgcttacctttcaatacaagccaaacctatttctctttctctttctct |
288 |
Q |
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| T |
42823439 |
--------aacattggatggatttcttgcttacctttcaatacaagccaaacctatttctctttctctttctct |
42823374 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 5934254 - 5934210
Alignment:
| Q |
130 |
agtgatcaacaacttgaacaagtttcaccttcatttgacaactcc |
174 |
Q |
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| T |
5934254 |
agtgatcaacaacttgaacaagtttcacctccatttgacacctcc |
5934210 |
T |
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