View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6899_low_23 (Length: 289)
Name: NF6899_low_23
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 6105726 - 6105994
Alignment:
| Q |
10 |
agaacctgtgcggcataacctctctaaaagggggcctgttgcacaaggcttccactaggtggagtctaaagcggagatgctgttttttggatttgaacct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6105726 |
agaacctgtgcggcataacctctctaaaagggggcctgttgcacaaggcttccactaggtggagtctaaagcggagatgctgttttttggatttgaacct |
6105825 |
T |
|
| Q |
110 |
gtgacatccatcacaaggcaaggcagcaatcttgcctctactttccagttacattctagttcacatacatgtttatttgaaatttgcaggaagttagctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6105826 |
gtgacatccatcacaaggcaaggcagcaatcttgcctctactttccagttacattctagttcacatacatgtttatttgaaacttgcaggaagttagctc |
6105925 |
T |
|
| Q |
210 |
tatgctactggagaaacttgttgctgcaggaattgggaatcgacctgttgtttttgttactcacaggtt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6105926 |
tatgctactggagaaacttgttgctgcaggaattgggaatcgacctgttgtttttgttactcataggtt |
6105994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University