View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_24 (Length: 286)
Name: NF6899_low_24
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 32062496 - 32062757
Alignment:
| Q |
10 |
gacatcaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcg |
109 |
Q |
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| T |
32062496 |
gacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcg |
32062595 |
T |
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| Q |
110 |
gtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcagga |
209 |
Q |
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| T |
32062596 |
gtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcagga |
32062695 |
T |
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| Q |
210 |
gaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
271 |
Q |
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| T |
32062696 |
gaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
32062757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
31 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
130 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
131 |
atgatga |
137 |
Q |
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| T |
32062752 |
atgatga |
32062758 |
T |
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