View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_25 (Length: 280)
Name: NF6899_low_25
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 2589099 - 2588835
Alignment:
| Q |
16 |
attacatttttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatgacaaatgtagatatagactaa |
115 |
Q |
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| T |
2589099 |
attacatttttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatggcaaatgtagatatggactaa |
2589000 |
T |
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| Q |
116 |
agattcatattgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgattacctgcatgaatagtga |
215 |
Q |
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| T |
2588999 |
agattcatattgattgagtagttagttttgtatcaaatcaagatattattcacatgtatagtaagatactaataaccatgattacctgcatgaatagtga |
2588900 |
T |
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| Q |
216 |
tctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgcaccatgttggaat |
280 |
Q |
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| T |
2588899 |
tctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgcaccatgttggaat |
2588835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 36251274 - 36251229
Alignment:
| Q |
141 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatacta |
186 |
Q |
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| T |
36251274 |
ttttatatcaattcaagatatgattcacatgtatagtaagatacta |
36251229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 20920891 - 20920806
Alignment:
| Q |
180 |
gatactaataaccatgattacctgcatgaatagtgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgca |
268 |
Q |
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| T |
20920891 |
gataataataaccatgattacctgtatgatgaatgatctgatttgcaa---caggtaccgcaggttgcacacgttgggcaagaggtgca |
20920806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 14161110 - 14161058
Alignment:
| Q |
139 |
agttttgtatcaaatcaagatactattcacatgtatagtaagatactaataac |
191 |
Q |
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| T |
14161110 |
agttttgtatcgaatcaagatacgactcaaatctatagtaagatactgataac |
14161058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 27329256 - 27329329
Alignment:
| Q |
123 |
tattgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgatt |
198 |
Q |
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| T |
27329256 |
tattgattgagt--ttagttttgtatcgaatcgatatacaattaacatgtatcgtaagatattgataaccatgatt |
27329329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 41335496 - 41335424
Alignment:
| Q |
193 |
atgattacctgcatgaatagtgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgca |
268 |
Q |
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| T |
41335496 |
atgattacctgtatgatgagtgatctgatctgcaacag---gtaccgcagcttgcgcacgttgggcaagaggtgca |
41335424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 41042642 - 41042586
Alignment:
| Q |
141 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgat |
197 |
Q |
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| T |
41042642 |
ttttctatcgaatcaagatacgactcgcatgtatcgtaagatactgataaccatgat |
41042586 |
T |
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