View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6899_low_26 (Length: 274)

Name: NF6899_low_26
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6899_low_26
NF6899_low_26
[»] chr4 (2 HSPs)
chr4 (18-271)||(26076305-26076559)
chr4 (29-106)||(5721971-5722048)
[»] chr3 (3 HSPs)
chr3 (1-183)||(32368343-32368525)
chr3 (138-271)||(32368534-32368668)
chr3 (29-106)||(18645741-18645818)
[»] chr1 (2 HSPs)
chr1 (60-271)||(4958422-4958634)
chr1 (11-106)||(44536499-44536594)
[»] chr7 (3 HSPs)
chr7 (13-271)||(5243114-5243377)
chr7 (11-64)||(35898170-35898223)
chr7 (12-91)||(296559-296638)
[»] chr2 (3 HSPs)
chr2 (11-133)||(12370874-12370994)
chr2 (188-271)||(12370720-12370803)
chr2 (11-91)||(3461271-3461351)
[»] chr8 (2 HSPs)
chr8 (187-270)||(1182860-1182943)
chr8 (24-124)||(1183007-1183107)
[»] scaffold0038 (1 HSPs)
scaffold0038 (11-64)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (11-64)||(28248673-28248726)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 26076559 - 26076305
Alignment:
Q  18 ggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaat 117  Q
    |||||||||||  ||||||||||||||||| || |||| || |||||||||||||||||||||||  ||||||||||| ||||| |||| ||||||||||    
T  26076559 ggttgtttctttttgcaccatgagattgcaacaccattgaacttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaat 26076460  T
Q  118 cagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagc 216  Q
    |||||||||||||||  | ||| |||| |   || || | ||||||||| | ||||||||||||||| || |||||||||| ||||| ||||||||||||    
T  26076459 cagagtatccctctaattcagcttctcctactttatttgcagctggaaataacaggccaaacttcaatgtacctttcacatatctcaatattcttttagc 26076360  T
Q  217 tgcagcgagatgggatttccttggatcattcatgaatctactgttgatacttact 271  Q
    ||||| |||||| || ||||||||||||||||||||||||||| | |||||||||    
T  26076359 tgcagtgagatgagacttccttggatcattcatgaatctactgattatacttact 26076305  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 5721971 - 5722048
Alignment:
Q  29 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 106  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  5721971 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 5722048  T

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Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 32368343 - 32368525
Alignment:
Q  1 atgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatc 100  Q
    |||||| || ||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||||| ||||| |||| ||||||||||||||||||||    
T  32368343 atgatagagcagtgattggttgtctcttagtgcaccatgaaattgcagcatcattgaatttgaataggcagccagaagtacttctcctatccattctatc 32368442  T
Q  101 tccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttca 183  Q
    |||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||    
T  32368443 tccacaccggtctgaatcagagtatccctctagcttagactctcctttcttgttagtagctggaaacatcgtgccaaacttca 32368525  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 32368534 - 32368668
Alignment:
Q  138 gcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttcc 236  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| ||| |||||| |||||||    
T  32368534 gcctctcctttcttgttagtagctggaaacatcagggcaaacttcagggttcctttcacatatctcagtattcttttagctacagtgagatgagatttcc 32368633  T
Q  237 ttggatcattcatgaatctactgttgatacttact 271  Q
    |||||||||||||||| |||| | |||||||||||    
T  32368634 ttggatcattcatgaacctaccgatgatacttact 32368668  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 18645741 - 18645818
Alignment:
Q  29 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 106  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  18645741 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 18645818  T

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Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 60 - 271
Target Start/End: Original strand, 4958422 - 4958634
Alignment:
Q  60 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag 159  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||| ||  ||||| | ||    
T  4958422 ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccctctagttcagcttctccttctttgtttgcag 4958521  T
Q  160 ctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctact 258  Q
     ||| || | ||||||||||||||  || |||||||||| ||||| ||| ||||| ||||||| ||||||  | ||||||||||||||||||||||||||    
T  4958522 ttgggaataacaggccaaacttcagtgtgcctttcacatgtctcaatatcctttttgctgcagtgagatgaaacttccttggatcattcatgaatctact 4958621  T
Q  259 gttgatacttact 271  Q
    | |||||||||||    
T  4958622 gatgatacttact 4958634  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 44536499 - 44536594
Alignment:
Q  11 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 106  Q
    ||||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  44536499 agtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatcaattagatctccaca 44536594  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 5243377 - 5243114
Alignment:
Q  13 tgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtag----ccataagtgcttctcctatccattctatctccacatc 108  Q
    |||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||     ||| |||||||||| ||||||||||| | |||||| |    
T  5243377 tgactggttgcttcttagtacaccatgagattgcatcatcattgaacttgaataagtatatatccagaagtgcttcttctatccattctctatccacacc 5243278  T
Q  109 agtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttca-aggtcctttcacatttctcagtat 207  Q
    |||| ||||| |||||||| ||||||||||||| || ||  ||| ||  || || || || ||  |||||||| | || ||||||||||| ||||| |||    
T  5243277 agtcagaatctgagtatccttctagcttagcctttccttcattgctatcagttgtaagcaacaaaccaaactttagagttcctttcacatatctcattat 5243178  T
Q  208 tcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgttgatacttact 271  Q
    | |||| ||||||| |||||| || ||||||||||||||||||||||| ||  |||||||||||    
T  5243177 tattttggctgcagtgagatgagacttccttggatcattcatgaatcttctaatgatacttact 5243114  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 35898223 - 35898170
Alignment:
Q  11 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 64  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  35898223 agtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaa 35898170  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 296638 - 296559
Alignment:
Q  12 gtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 91  Q
    |||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  296638 gtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 296559  T

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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 12370994 - 12370874
Alignment:
Q  11 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcag 110  Q
    |||||||||||||||||| |||||||||||||||||| || |||| || ||||||||||||| | | |||||| |||  ||||||||||||||||| |||    
T  12370994 agtgactggttgtttctttgtgcaccatgagattgcagcaccattgaacttgaataggtagctagaggtgcttttcc--tccattctatctccacaccag 12370897  T
Q  111 tctgaatcagagtatccctctag 133  Q
    |||||||||||||||||||||||    
T  12370896 tctgaatcagagtatccctctag 12370874  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 12370803 - 12370720
Alignment:
Q  188 cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgttgatacttact 271  Q
    |||||||||| ||||| ||| ||||| | ||||| |||||| || |||||||||||||||||| |||||||| |||||||||||    
T  12370803 cctttcacatatctcaatatcctttttgatgcagtgagatgagacttccttggatcattcatgcatctactgatgatacttact 12370720  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 3461351 - 3461271
Alignment:
Q  11 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 91  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  3461351 agtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 3461271  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 1182943 - 1182860
Alignment:
Q  187 tcctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgttgatacttac 270  Q
    ||||||||||| ||| || | |||||||||||||| |||||| |||||||| |||||||||||| |||||||| ||||||||||    
T  1182943 tcctttcacatatcttagcactcttttagctgcagtgagatgagatttcctaggatcattcatgtatctactgatgatacttac 1182860  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 1183107 - 1183007
Alignment:
Q  24 ttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagt 123  Q
    ||||| || |||||||| |||||| |||  || || ||||| |  |||||| | ||||||||||||||  |||||||| |||| || |||||||||||||    
T  1183107 ttctttgtacaccatgatattgcaacattgttgaacttgaagacatagccagatgtgcttctcctatcacttctatcttcacaccaatctgaatcagagt 1183008  T
Q  124 a 124  Q
    |    
T  1183007 a 1183007  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 48888 - 48835
Alignment:
Q  11 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 64  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  48888 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 48835  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 28248726 - 28248673
Alignment:
Q  11 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 64  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  28248726 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 28248673  T

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