View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6899_low_28 (Length: 270)

Name: NF6899_low_28
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6899_low_28
NF6899_low_28
[»] chr8 (4 HSPs)
chr8 (12-250)||(140321-140559)
chr8 (50-174)||(4700702-4700826)
chr8 (44-141)||(24126076-24126173)
chr8 (32-200)||(24322668-24322835)
[»] chr6 (2 HSPs)
chr6 (44-141)||(10404532-10404629)
chr6 (32-118)||(29337053-29337139)
[»] chr5 (2 HSPs)
chr5 (32-141)||(6821119-6821228)
chr5 (32-138)||(434339-434445)
[»] chr3 (2 HSPs)
chr3 (32-141)||(6172848-6172957)
chr3 (32-141)||(6252192-6252301)
[»] chr1 (7 HSPs)
chr1 (44-141)||(19036482-19036579)
chr1 (33-121)||(32499881-32499969)
chr1 (41-121)||(15585897-15585977)
chr1 (44-200)||(28040022-28040177)
chr1 (43-139)||(36154219-36154315)
chr1 (32-113)||(7793898-7793979)
chr1 (32-139)||(37201299-37201406)
[»] chr2 (3 HSPs)
chr2 (44-214)||(9684315-9684485)
chr2 (32-121)||(8589110-8589199)
chr2 (32-78)||(45465859-45465905)
[»] chr7 (1 HSPs)
chr7 (44-141)||(19278227-19278324)
[»] chr4 (2 HSPs)
chr4 (36-121)||(23808671-23808756)
chr4 (35-68)||(24403650-24403683)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 140321 - 140559
Alignment:
Q  12 tggacatcattatacaaaataaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcat 111  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140321 tggacgtcattagacaaaataaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcat 140420  T
Q  112 taactcaacagtcctggaagctctcttcatcgttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcacccgcaatgtcagc 211  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||    
T  140421 taactcaacagtcctggaagctctcttcattgttgtccctcggataaaaccttgatctcgactcacaacccttccgagcaatttcacccgcaatgtcagc 140520  T
Q  212 ctcagcctcctaatgtccaaaggagacaacattcacgtt 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  140521 ctcagcctcctaatgtccaaaggagacaacattcacgtt 140559  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 4700702 - 4700826
Alignment:
Q  50 atgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcatcgttgtcc 149  Q
    |||||||||||||||||||||||||| |||| ||||||    | || | ||||| |||||||||||||||||  |||||||||||||||||| ||   ||    
T  4700702 atgcatgatcgaagtagaagaagctcgctctgaggatcttgcaactattgaagacaatgcattaactcaacaaccctggaagctctcttcatggtcaacc 4700801  T
Q  150 cttggataaaaccttgatctcgact 174  Q
    | | ||||||||||| |||||||||    
T  4700802 cctcgataaaacctttatctcgact 4700826  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 24126076 - 24126173
Alignment:
Q  44 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 141  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  | || | | ||||||| |||||| || |||  || ||||||| ||||||||||    
T  24126076 atacccatgcacgatcgaagtagaagaagctcactctgaggatgtcgtaaccgaggaagaagatgcatcaagtcagtagccctggaaactctcttcat 24126173  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 24322668 - 24322835
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 131  Q
    |||||||| | ||||| ||||||||||||||||||||||| |||||| |   | || | ||  |||||||||| |||||||||||||  || ||  ||||    
T  24322668 aaaagtttcgcgatactcatgcatgatcgaagtagaagaaactcactattcagctctcgtaattgtggaagaagatgcattaactcagtag-cccagaag 24322766  T
Q  132 ctctcttcatcgttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcaccc 200  Q
    |||||||||| | |  ||| | |||||||| |  |||||| || ||||||| || ||||| ||||||||    
T  24322767 ctctcttcatgggtagcccctcgataaaacatgtatctcggctaacagcccctccgagcaatttcaccc 24322835  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 10404532 - 10404629
Alignment:
Q  44 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || || || |||||   ||||||||||||||  ||||||||||||||||||    
T  10404532 atacccatgcatgatcgaagtagaagaagctcactctaaggatctcgtaactatgaaagaaggagcattaactcaacaaccctggaagctctcttcat 10404629  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 29337139 - 29337053
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactca 118  Q
    |||| ||||| ||||||| |||| ||| ||||||||||||||||||||| |||||| | || ||||||||||| |||||||||||||    
T  29337139 aaaactttggcgatacccttgcacgattgaagtagaagaagctcactctgaggatctcataactgtggaagaagatgcattaactca 29337053  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 6821228 - 6821119
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 131  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| | | || ||| ||||| |||||||||| ||||| ||||||||||  |||| |||    
T  6821228 aaaactttggtgatacccatgtatgatcgaagtagaagaagctcagtatgagaatctcttagttgtggaagaagatgcactaactcaacaaccctgaaag 6821129  T
Q  132 ctctcttcat 141  Q
    ||||||||||    
T  6821128 ctctcttcat 6821119  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 434339 - 434445
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 131  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| || |||||| | || | |||||||||  |||||||||||||||   |||||||    
T  434339 aaaagtttggtgatacccatgcatgatcgaagtagaaaaatctcacgctgaggatctcgtaaccgtggaagaaggtgcattaactcaacaactctggaag 434438  T
Q  132 ctctctt 138  Q
    |||||||    
T  434439 ctctctt 434445  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 6172957 - 6172848
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 131  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||| | || |||||||||||  |||||||||||||||   ||||||     
T  6172957 aaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaaggtgcattaactcaacaacactggaaa 6172858  T
Q  132 ctctcttcat 141  Q
    ||||||||||    
T  6172857 ctctcttcat 6172848  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 6252301 - 6252192
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 131  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||| | || |||||||||||  |||||||||||||||   ||||||     
T  6252301 aaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttgcattaactcaacaacactggaaa 6252202  T
Q  132 ctctcttcat 141  Q
    ||||||||||    
T  6252201 ctctcttcat 6252192  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 19036482 - 19036579
Alignment:
Q  44 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 141  Q
    |||||||||||  |||||||||||||||||||||||| |||||| | || ||| ||||||| ||||||||||||| ||| ||||||||||||||||||    
T  19036482 atacccatgcacaatcgaagtagaagaagctcactctgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctcttcat 19036579  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 32499969 - 32499881
Alignment:
Q  33 aaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 121  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| | ||  |||| ||||  | |||||||||||||||||||||||||    
T  32499969 aaagtttggcgatacccatgcatgatcgaagtagaagaaactcattttagagatctcttaattatggaagaaaatgcattaactcaaca 32499881  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 15585897 - 15585977
Alignment:
Q  41 gtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 121  Q
    ||||||||||||||||||||||||| || |||| |||| || || || ||||  |||||||||| ||||||||||||||||    
T  15585897 gtgatacccatgcatgatcgaagtataataagcccactttatgggtctcttaattgtggaagaagatgcattaactcaaca 15585977  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 28040177 - 28040022
Alignment:
Q  44 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcatcg 143  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||  | || ||| ||||||| ||| ||||| | | ||| |||| ||||||||||||| |    
T  28040177 atacccatgcacgatcgaagtagaagaagctaactctgaggattccgtaactgaggaagaagatgtattaa-ttagcagccctgtaagctctcttcatgg 28040079  T
Q  144 ttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcaccc 200  Q
     |  ||| |  |||||||||| |||||| || | ||||| || ||||| ||||||||    
T  28040078 ctaacccctcaataaaacctttatctcgtctaaaagcccctccgagcaatttcaccc 28040022  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 36154315 - 36154219
Alignment:
Q  43 gatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttc 139  Q
    ||||| |||||||||| ||| | ||||||| ||||||| |||| | ||||| |||| ||||| |||||||||||||| ||  |||||| ||||||||    
T  36154315 gatactcatgcatgattgaaatggaagaagttcactcttaggaccccttagttgtgaaagaagatgcattaactcaatagctctggaaactctcttc 36154219  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 7793979 - 7793898
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcatta 113  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| | | | |||| | ||  |||||||||||| ||||||    
T  7793979 aaaattttggtgatacccaaacatgatcgaagtagaagaagctcattatgacgatctcgtaattgtggaagaaaaagcatta 7793898  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 37201299 - 37201406
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 131  Q
    |||| |||||||||||||||| ||| | |||||| || ||| ||||| | ||||||   ||  ||| |||||| || ||||||||||  |||||||||||    
T  37201299 aaaaatttggtgatacccatgtatgcttgaagtaaaataagttcactttgaggatcttgtaagtgtagaagaagatacattaactcagtagtcctggaag 37201398  T
Q  132 ctctcttc 139  Q
    ||||||||    
T  37201399 ctctcttc 37201406  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 9684485 - 9684315
Alignment:
Q  44 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcatcg 143  Q
    ||||||||||| | ||||||||||||||||||||||| |||||| | ||  || ||||||| ||||||||||||| ||| |||| ||||||||||||| |    
T  9684485 atacccatgcacgttcgaagtagaagaagctcactctgaggatcccgtaagtgaggaagaagatgcattaactcagcagccctgaaagctctcttcatgg 9684386  T
Q  144 ttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcacccgcaatgtcagcctc 214  Q
        ||| | ||||||||||| |||||| || |||||||  | ||||| |||||||| ||| ||| |||||    
T  9684385 ccaacccctcgataaaacctttatctcggctaacagccccaccgagcaatttcacccccaacgtcggcctc 9684315  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 8589110 - 8589199
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 121  Q
    |||||||| | ||| ||||||||||||||||||||| |||| ||||||  |||||| ||||  |||||||||| ||||||||||||||||    
T  8589110 aaaagtttagcgattcccatgcatgatcgaagtagaggaagttcactcggaggatcccttaattgtggaagaatatgcattaactcaaca 8589199  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 45465859 - 45465905
Alignment:
Q  32 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcact 78  Q
    ||||| |||||||||||||| ||||||| |||||||||||| |||||    
T  45465859 aaaagattggtgatacccatacatgatcaaagtagaagaagttcact 45465905  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 19278227 - 19278324
Alignment:
Q  44 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 141  Q
    ||||||||||| |||| |||||||||||||||||| | |||||| | || ||| ||||||| ||||||||||||| ||| |||||||||||| |||||    
T  19278227 atacccatgcacgatcaaagtagaagaagctcactatgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctattcat 19278324  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 23808756 - 23808671
Alignment:
Q  36 gtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 121  Q
    ||||| |||||| |||||||| ||||||||||| ||||||||  | |||| | |||| ||||||||||| ||| ||||||||||||    
T  23808756 gtttgatgatactcatgcatggtcgaagtagaataagctcacgttgaggaccccttaactgtggaagaagatgtattaactcaaca 23808671  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 24403650 - 24403683
Alignment:
Q  35 agtttggtgatacccatgcatgatcgaagtagaa 68  Q
    ||||||||||||| ||||||||||||||||||||    
T  24403650 agtttggtgatactcatgcatgatcgaagtagaa 24403683  T

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