View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_29 (Length: 254)
Name: NF6899_low_29
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_29 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 21447141 - 21447349
Alignment:
| Q |
34 |
taatggacatgtaatcaagttttgacatacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgatt |
133 |
Q |
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| T |
21447141 |
taatggacatgtaatcaagttttgacatacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgatt |
21447240 |
T |
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| Q |
134 |
agcctatcaagactgtcaatcaccatctcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagctggtct |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21447241 |
agcctatcaagactgtcaatcaccatctcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagccagtct |
21447340 |
T |
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| Q |
234 |
ctgatgtcc |
242 |
Q |
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||||||||| |
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| T |
21447341 |
ctgatgtcc |
21447349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 4368 - 4187
Alignment:
| Q |
61 |
tacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatc |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368 |
tacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatc |
4269 |
T |
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| Q |
161 |
tcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagctggtctctgatgtcc |
242 |
Q |
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| T |
4268 |
tcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagccagtctctgatgtcc |
4187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 40685453 - 40685310
Alignment:
| Q |
57 |
gacatacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcac |
156 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||| | ||||||||||||||| || ||||||||||| |
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| T |
40685453 |
gacatacaacaaagttgagactcaagtgaacaccctcaacaacaacggactctttccgttcttcccatgaagtgattagcctatctaggctgtcaatcac |
40685354 |
T |
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| Q |
157 |
catctcactctgcgccttatatccttcaatagccatttgttttg |
200 |
Q |
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||| |||||||| ||||| ||||||||| |||||||||||||| |
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| T |
40685353 |
catttcactctgggccttgaatccttcaacagccatttgttttg |
40685310 |
T |
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