View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_33 (Length: 234)
Name: NF6899_low_33
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 4924305 - 4924103
Alignment:
| Q |
17 |
aattatttgttatgcagttgaatcaagagaaagtacataaagatgagaaaagattattgcctgatttgcaactaggtttgagtcacacatatggaaacaa |
116 |
Q |
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| T |
4924305 |
aattatttgttatgcagttgaatcaagagaaagtacataaagatgagaaaagattattgcctgatttgcaactaggtttgagtcacatatatggaaacaa |
4924206 |
T |
|
| Q |
117 |
tgatggtaagattgatcattgcagagagaccaaggaaattagcacaaagttatcactttcttagaattcatgttgctacaagataaacaaatacacgatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4924205 |
tgatggtaagattgatcattgcagagagaccaaggaaattagcacaaagttatcactttcttagaattcatgttgctacaagataaacaaatacacgatt |
4924106 |
T |
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| Q |
217 |
cat |
219 |
Q |
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||| |
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| T |
4924105 |
cat |
4924103 |
T |
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