View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_34 (Length: 233)
Name: NF6899_low_34
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 55910924 - 55910703
Alignment:
| Q |
13 |
atcaggtgtgaatatatctttatttgattcagcagtttggagcaataacagatctacaaaaataatcatagcggnnnnnnn-gctagggagagtaacaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |
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| T |
55910924 |
atcaggtgtgaatatatctttatttgattcagcagtttggagcaataacagatctacaaaaataatcatagcggaaaaaaaagctaggaaaagtaacaat |
55910825 |
T |
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| Q |
112 |
attcgattaaaaggatgtggcaaagaaaactcaatccagccacaaactaacatagcaagaaagatcctatgaaacaaaactgcacaatcaaaactaagaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55910824 |
attcgattaaaaggatgtggcaaagaaaactcaatccagccacaaactaacatagcaagaaagatcctatgaaacaaaactgcacaatcaaaactaagaa |
55910725 |
T |
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| Q |
212 |
caaaatgccagtcacgccccac |
233 |
Q |
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|||||||||| ||||||||||| |
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| T |
55910724 |
caaaatgccaatcacgccccac |
55910703 |
T |
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