View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6899_low_36 (Length: 226)

Name: NF6899_low_36
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6899_low_36
NF6899_low_36
[»] chr7 (7 HSPs)
chr7 (1-221)||(4008438-4008658)
chr7 (1-221)||(4013830-4014050)
chr7 (168-219)||(6028592-6028643)
chr7 (72-211)||(15902797-15902936)
chr7 (72-178)||(24339650-24339756)
chr7 (72-120)||(5409787-5409835)
chr7 (99-211)||(26329354-26329466)
[»] scaffold0376 (1 HSPs)
scaffold0376 (94-178)||(6320-6404)
[»] chr5 (2 HSPs)
chr5 (72-178)||(32766888-32766994)
chr5 (73-200)||(30098312-30098439)
[»] chr1 (5 HSPs)
chr1 (79-179)||(6612123-6612223)
chr1 (72-178)||(9828052-9828158)
chr1 (60-120)||(1486648-1486708)
chr1 (97-178)||(9629870-9629951)
chr1 (161-217)||(37055890-37055946)
[»] chr8 (4 HSPs)
chr8 (102-194)||(4122224-4122316)
chr8 (72-120)||(22197687-22197735)
chr8 (76-128)||(12570458-12570510)
chr8 (76-128)||(12570684-12570736)
[»] chr3 (2 HSPs)
chr3 (79-178)||(8039787-8039886)
chr3 (60-178)||(17005552-17005670)
[»] chr6 (3 HSPs)
chr6 (60-178)||(10294115-10294233)
chr6 (60-206)||(25038004-25038150)
chr6 (131-179)||(32320673-32320721)
[»] chr2 (1 HSPs)
chr2 (60-178)||(18420367-18420485)
[»] chr4 (3 HSPs)
chr4 (148-221)||(20521870-20521943)
chr4 (72-120)||(3947717-3947765)
chr4 (72-120)||(23292942-23292990)
[»] scaffold0053 (1 HSPs)
scaffold0053 (72-120)||(8853-8901)
[»] scaffold0044 (1 HSPs)
scaffold0044 (97-177)||(53189-53269)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4008438 - 4008658
Alignment:
Q  1 caactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataaactgccacacagaagcacatactctcctcagattaggcgtatcctggcgtcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4008438 caactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataatctgccacacagaagcacatactctcctcagattaggtgtatcctggcgtcg 4008537  T
Q  101 gacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgacgtatcagtgtc 200  Q
    |||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||  ||| ||||| ||    
T  4008538 gacacgtgccgtgtcggacatcgatacaataccgacacatacaattacattgaatcatgtaattttatcaaattattaaaggtgtctgcgtgtcagtttc 4008637  T
Q  201 tgtgtcatgtctgatgtccat 221  Q
    |||||||| ||||||||||||    
T  4008638 tgtgtcatatctgatgtccat 4008658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4013830 - 4014050
Alignment:
Q  1 caactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataaactgccacacagaagcacatactctcctcagattaggcgtatcctggcgtcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4013830 caactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataatctgccacacagaagcacatactctcctcagattaggtgtatcctggcgtcg 4013929  T
Q  101 gacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgacgtatcagtgtc 200  Q
    |||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||  ||| ||||| ||    
T  4013930 gacacgtgccgtgtcggacatcgatacaataccgacacatacaattacattgaatcatgtaattttatcaaattattaaaggtgtctgcgtgtcagtttc 4014029  T
Q  201 tgtgtcatgtctgatgtccat 221  Q
    |||||||| ||||||||||||    
T  4014030 tgtgtcatatctgatgtccat 4014050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 6028643 - 6028592
Alignment:
Q  168 tcaaattattaaagatatcgacgtatcagtgtctgtgtcatgtctgatgtcc 219  Q
    ||||||||||||  ||||||| || |||||||||||||| ||||||||||||    
T  6028643 tcaaattattaaccatatcgatgtgtcagtgtctgtgtcgtgtctgatgtcc 6028592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 15902936 - 15902797
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 171  Q
    ||||||| |||| |||| ||||||  |||| || ||||| ||||||| | ||| |||| ||||||||||| ||| ||| | ||| |||  ||||||||||    
T  15902936 ctcctcaaattaagcgtgtcctggtctcgggcatgtgtcgtgtccgataccgacacaacaccgacacatataattacactaaattatgtgattttatcaa 15902837  T
Q  172 attattaaagatatcgacgtatcagtgtctgtgtcatgtc 211  Q
    |||||||  | | ||| | | |||||||||||||| ||||    
T  15902836 attattattggtgtcggcatgtcagtgtctgtgtcgtgtc 15902797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 24339756 - 24339650
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 171  Q
    |||||| |||||||||| ||| || |||||| ||||||| ||||||||| ||| || | |||||||| |  ||| ||| ||||| |||  ||||| ||||    
T  24339756 ctcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaa 24339657  T
Q  172 attatta 178  Q
    |||||||    
T  24339656 attatta 24339650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 5409787 - 5409835
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 120  Q
    |||||| |||||||||| ||| || |||||||||||||| |||||||||    
T  5409787 ctcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgaca 5409835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 26329354 - 26329466
Alignment:
Q  99 cggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgacgtatcagtg 198  Q
    |||||||||||| |||| |||| ||| || |  |||||||||| ||| ||| |||||  ||   |||| |||||||||||| ||| ||| ||| ||||||    
T  26329354 cggacacgtgtcgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtg 26329453  T
Q  199 tctgtgtcatgtc 211  Q
    |||||||| ||||    
T  26329454 tctgtgtcgtgtc 26329466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 6404 - 6320
Alignment:
Q  94 ggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 178  Q
    |||||||||| |||||| || || ||| |||||| | ||||||||||| ||| ||||||||| |||||||||| |||||||||||    
T  6404 ggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattacattgaattatgcaattttgtcaaattatta 6320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 32766888 - 32766994
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 171  Q
    ||||||||||||| |||||||||| |||||||||||||| | | ||||| ||| || | ||  ||||||| ||| |||||||||  ||| ||||| ||||    
T  32766888 ctcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattacattgaattgtgcgattttctcaa 32766987  T
Q  172 attatta 178  Q
    |||||||    
T  32766988 attatta 32766994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 30098439 - 30098312
Alignment:
Q  73 tcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaa 172  Q
    ||||| ||||||| || |||||| ||| |||||||||| |||||||||  ||  | |||||||||  || ||| ||||||||| |||  ||||| |||||    
T  30098439 tcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaattatgtgattttctcaaa 30098340  T
Q  173 ttattaaagatatcgacgtatcagtgtc 200  Q
    ||||||| | | ||| ||| ||||||||    
T  30098339 ttattaacggtttcgtcgtgtcagtgtc 30098312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 6612123 - 6612223
Alignment:
Q  79 gattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 178  Q
    |||||||||| |||||| ||||||||| | || ||||||||||||| || | |||||||| |  ||| ||| ||||| ||| |||||| |||||||||||    
T  6612123 gattaggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 6612222  T
Q  179 a 179  Q
    |    
T  6612223 a 6612223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 9828158 - 9828052
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 171  Q
    |||||| |||||| ||| ||| || |||||||||||||| |||| ||||  || || | ||||||||||| ||| ||| ||||| |||  ||||||||||    
T  9828158 ctcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgattttatcaa 9828059  T
Q  172 attatta 178  Q
    |||||||    
T  9828058 attatta 9828052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 1486648 - 1486708
Alignment:
Q  60 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 120  Q
    |||||||| || |||||| |||||||||| ||| || |||||||||||||| |||||||||    
T  1486648 gaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgaca 1486708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 9629870 - 9629951
Alignment:
Q  97 gtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 178  Q
    |||||||| ||||| ||||||||||||| || | |||||||| || ||| ||| ||||| ||   |||||||||||||||||    
T  9629870 gtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgattttatcaaattatta 9629951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 37055890 - 37055946
Alignment:
Q  161 aattttatcaaattattaaagatatcgacgtatcagtgtctgtgtcatgtctgatgt 217  Q
    |||||| |||||||||||    |||||| |||||||||||||||||||||| |||||    
T  37055890 aattttctcaaattattagcagtatcgatgtatcagtgtctgtgtcatgtccgatgt 37055946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 4122224 - 4122316
Alignment:
Q  102 acacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgacgtatc 194  Q
    ||||||||| |||  ||||| || |||| ||||||||||| ||| ||| ||||| ||  ||||||||| ||||||||| ||| ||||||||||    
T  4122224 acacgtgtcgtgtttgacattgacacaacaccgacacatataattacaatgaattatataattttatctaattattaatgatgtcgacgtatc 4122316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 22197687 - 22197735
Alignment:
Q  72 ctcctcagattaggcgt-atcctggcgtcggacacgtgtcatgtccgaca 120  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||    
T  22197687 ctcctcagattaggcgtgatcc-ggtgtcggacacgtgtcatgtccgaca 22197735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 12570458 - 12570510
Alignment:
Q  76 tcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgataca 128  Q
    ||||||||||||| |||||| |||||||||||||  |||| |||| |||||||    
T  12570458 tcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgataca 12570510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 12570684 - 12570736
Alignment:
Q  76 tcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgataca 128  Q
    ||||||||||||| |||||| |||||||||||||  |||| |||| |||||||    
T  12570684 tcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgataca 12570736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 8039787 - 8039886
Alignment:
Q  79 gattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 178  Q
    ||||| |||| ||| || |||||||| || |||||||||||| ||| || | ||||||||||| ||| ||| ||||| ||  |||||| |||||||||||    
T  8039787 gattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattatta 8039886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 17005552 - 17005670
Alignment:
Q  60 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 159  Q
    |||||||| || |||||| ||||||  || |||||| ||| ||||||||| ||||| |||| | | |||| |||||||| || ||| ||| ||||| ||     
T  17005552 gaagcacaaacactcctcggattagaggtgtcctggtgtcagacacgtgttatgtctgacaccaacacaacaccgacacttataattacactgaattata 17005651  T
Q  160 caattttatcaaattatta 178  Q
      |||||||||||||||||    
T  17005652 tgattttatcaaattatta 17005670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 10294233 - 10294115
Alignment:
Q  60 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 159  Q
    |||||||| || |||||||||||||  || |||| |  |||||||| |||| ||||||||| | | || | ||||||||||| ||| ||||||||  |||    
T  10294233 gaagcacagacactcctcagattagctgtgtcctagtttcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattacattgaaatatg 10294134  T
Q  160 caattttatcaaattatta 178  Q
    | ||| | |||||||||||    
T  10294133 cgattatctcaaattatta 10294115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 25038004 - 25038150
Alignment:
Q  60 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 159  Q
    ||||||||||| || ||||| | | |||| | |||| |||||||||||||| |||| |||| | | ||||||||||||  |  ||| ||| | ||| |||    
T  25038004 gaagcacatacacttctcaggtcatgcgtgttctggtgtcggacacgtgtcgtgtcggacaccaacacaataccgacatttgtaattacactaaattatg 25038103  T
Q  160 caattttatcaaattattaaagatatcgacgtatcagtgtctgtgtc 206  Q
     |||||| |||||||||||| | | || |||| ||||| ||||||||    
T  25038104 taattttctcaaattattaacggtgtcaacgtgtcagtatctgtgtc 25038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 32320673 - 32320721
Alignment:
Q  131 accgacacatacaatgacattgaatcatgcaattttatcaaattattaa 179  Q
    ||||| ||||| ||||||||||||| |||  ||||||||||||||||||    
T  32320673 accgatacatataatgacattgaattatgtgattttatcaaattattaa 32320721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 18420367 - 18420485
Alignment:
Q  60 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 159  Q
    |||||||| || || ||| |||||||||| || |   |||| |||| ||||||||||||||| || |||| |||||||| || |||  |||||||| |||    
T  18420367 gaagcacagacacttctcggattaggcgtgtcataatgtcgaacacttgtcatgtccgacatggacacaacaccgacacttataattgcattgaattatg 18420466  T
Q  160 caattttatcaaattatta 178  Q
      ||||| |||||||||||    
T  18420467 tgattttctcaaattatta 18420485  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 20521870 - 20521943
Alignment:
Q  148 cattgaatcatgcaattttatcaaattattaaagatatcgacgtatcagtgtctgtgtcatgtctgatgtccat 221  Q
    |||||||| |||  |||||||||||||||||  | ||||| ||| |||||||| ||||| |||||| |||||||    
T  20521870 cattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtctggtgtccat 20521943  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 3947717 - 3947765
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 120  Q
    |||||| ||||||| || |||||| |||||||||||||| |||||||||    
T  3947717 ctcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgaca 3947765  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 23292942 - 23292990
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 120  Q
    |||||| |||||||||| ||| || |||||||||||||| |||||||||    
T  23292942 ctcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgaca 23292990  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 8901 - 8853
Alignment:
Q  72 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 120  Q
    ||||||||||||||||| ||  || |||||||||||||| |||||||||    
T  8901 ctcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgaca 8853  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 53269 - 53189
Alignment:
Q  97 gtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatt 177  Q
    |||||||||||||||||||||||| ||| ||   |||||||| || ||| ||| ||||| |||  ||||| ||||||||||    
T  53269 gtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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