View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_7 (Length: 479)
Name: NF6899_low_7
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 25285494 - 25285243
Alignment:
| Q |
20 |
cacttgacctataccttagagatttcacctccccgagtttgaaagatggttattaaggcctttggcaagtgaggagcaacacttgaaggtctgcagggtc |
119 |
Q |
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| T |
25285494 |
cacttgacctataccttagagatttcacctccccgagtttgaaagatggttattaaggcctttggcaagtgaggagcaacacttgaaggtctgcagggtc |
25285395 |
T |
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| Q |
120 |
ttgtaattaggtattacctgtatttcttttaattaagaaaaaccagttccatagttcctatcaatttacttgagacatattcagtgctcctcagttctta |
219 |
Q |
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| T |
25285394 |
ttgtaattaggtattacctgtatttcttttaattaagaaaaaccagttccatatttcctatcaatttacttgagacatattcagtgctcctcagttctta |
25285295 |
T |
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| Q |
220 |
gtaagtcggaaatgacaacttcacatatatttgatgaggcctttcattagta |
271 |
Q |
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| T |
25285294 |
gtaagtcggaaatgacaacttcacatatatttgatgaggcctttcattagta |
25285243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 305 - 466
Target Start/End: Complemental strand, 25285208 - 25285046
Alignment:
| Q |
305 |
cttccttggtagtagagaagaataatcaaaatgtcggttcacctttctgtctgtagtcatcgttccttttatcgggtgattctttcatttcttttatagg |
404 |
Q |
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| T |
25285208 |
cttccttggtagtagagaagaataatcaaaatgtcggttcacctttctgtctgtagtcatcgttccttttatcgggtgattctttcatttcttttatagg |
25285109 |
T |
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| Q |
405 |
ataagacctggctcaac-nnnnnnnnngggtttatagcaacagcaaagcctttgcttgatgtc |
466 |
Q |
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| T |
25285108 |
ataagacctggctcaactttttttttggggtttatagcaacagcaaagcctttgcttgatgtc |
25285046 |
T |
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