View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_8 (Length: 471)
Name: NF6899_low_8
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 27967001 - 27966546
Alignment:
| Q |
1 |
aactttagcaaaccaccacatgttgttacgtggctcgtttatcatcattaaattcatatttctgcatctttttatcaaacatgctacggaatacaagtca |
100 |
Q |
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| T |
27967001 |
aactttagcaaaccaccacatgttgttacgtggctcgtttatcatcattaaattcatattgctgcatctttttatcaaacatgctactgaatacaagtca |
27966902 |
T |
|
| Q |
101 |
cttaccaaactaaacaacactaactaaagaattcgacataaaaacttacaacttacggtttcagatnnnnnnnnnnnnnnngactacacaaaattgaata |
200 |
Q |
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| T |
27966901 |
cttaccaaactaaacaacactgactaaagaattcgacataaaaacttacaacttacggtttcagatataaaaaaataaaaagactacacaaaattgaata |
27966802 |
T |
|
| Q |
201 |
tgctattgaaaagaatttttaccaatccttgcaatttactaacttcttacaaaataactgaggccagtagaatgcttacatttcataatcgaatcaaaaa |
300 |
Q |
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|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27966801 |
tgctattgaaaagaattt--actaatccttgcaatttactaatatcttacaaaataactgaggcctgtagaatgcttacatttcataatcgaatcaaaaa |
27966704 |
T |
|
| Q |
301 |
caaacaaaccggttttatttttaaaaattgaatgaactatatgattgctaaagtgggatacaattgggatatcactgaacaaaaatgtcatcaatcccag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27966703 |
caaacaaaccggttttatttttaaaaattgaatgaactatatgattgctaaagtgggatacaattgggatatcactgaacaaaaatgtcatcaatcccag |
27966604 |
T |
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| Q |
401 |
aattgttctaaacaatatagtgaacacacccattcaggatcattggctacttgatgtc |
458 |
Q |
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| T |
27966603 |
aattgttctaaacaatatagtgaacacacccattcaggatcattggctacttgatgtc |
27966546 |
T |
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