View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6899_low_9 (Length: 434)
Name: NF6899_low_9
Description: NF6899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6899_low_9 |
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| [»] scaffold0008 (8 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 386; Significance: 0; HSPs: 8)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 69922 - 70342
Alignment:
| Q |
1 |
atggatttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaacatcatatatg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69922 |
atggatttcagacctattagcctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaacatcatatatg |
70021 |
T |
|
| Q |
101 |
aagagaaaaacgcctttgtaaatggaagattgatttgtagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagttatttcaca |
200 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70022 |
aagagcaaaacgcctttgtaaatggaagattgatttaaagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagttatttcaca |
70121 |
T |
|
| Q |
201 |
gaaatgcatgcttcctctaaaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtggggattgtt |
300 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70122 |
gaaatgcatgtttcctctagaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtggggattgtt |
70221 |
T |
|
| Q |
301 |
tcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaagtattggca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
70222 |
tcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccgtattttaacaaaagtattggca |
70321 |
T |
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| Q |
401 |
tattgtaggagggtgatgtcca |
422 |
Q |
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|||||||||| ||||||||||| |
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| T |
70322 |
tattgtagga-ggtgatgtcca |
70342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 77765 - 78185
Alignment:
| Q |
1 |
atggatttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaacatcatatatg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77765 |
atggatttcagacctattagcctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaacatcatatatg |
77864 |
T |
|
| Q |
101 |
aagagaaaaacgcctttgtaaatggaagattgatttgtagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagttatttcaca |
200 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77865 |
aagagcaaaacgcctttgtaaatggaagattgatttaaagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagttatttcaca |
77964 |
T |
|
| Q |
201 |
gaaatgcatgcttcctctaaaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtggggattgtt |
300 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77965 |
gaaatgcatgtttcctctagaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtggggattgtt |
78064 |
T |
|
| Q |
301 |
tcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaagtattggca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
78065 |
tcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccgtattttaacaaaagtattggca |
78164 |
T |
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| Q |
401 |
tattgtaggagggtgatgtcca |
422 |
Q |
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|||||||||| ||||||||||| |
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| T |
78165 |
tattgtagga-ggtgatgtcca |
78185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 422
Target Start/End: Original strand, 69698 - 69821
Alignment:
| Q |
298 |
gtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaagtattg |
397 |
Q |
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|||||| ||||||| | ||||| | |||||||| || ||||||| |||||||| | |||||| |||||||| || | |||||||||| ||||||||||| |
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| T |
69698 |
gtttcactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattg |
69797 |
T |
|
| Q |
398 |
gcatattgtaggagggtgatgtcca |
422 |
Q |
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|||| |||||||| ||||||||||| |
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| T |
69798 |
gcattttgtagga-ggtgatgtcca |
69821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 422
Target Start/End: Original strand, 77541 - 77664
Alignment:
| Q |
298 |
gtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaagtattg |
397 |
Q |
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| T |
77541 |
gtttcactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattg |
77640 |
T |
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| Q |
398 |
gcatattgtaggagggtgatgtcca |
422 |
Q |
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|||| |||||||| ||||||||||| |
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| T |
77641 |
gcattttgtagga-ggtgatgtcca |
77664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 70447 - 70500
Alignment:
| Q |
5 |
atttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaa |
58 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
70447 |
atttcagacatattagtctttgtaacgtagtgatgataattgtgacaaaaacaa |
70500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 78290 - 78343
Alignment:
| Q |
5 |
atttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaa |
58 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
78290 |
atttcagacatattagtctttgtaacgtagtgatgataattgtgacaaaaacaa |
78343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 69654 - 69695
Alignment:
| Q |
221 |
accaagtgcaattgaagatgtgtgtgaggtagtgaaagggaa |
262 |
Q |
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| T |
69654 |
accaagtgcaattaaacatgtgtgtgaggtagtgaaagggaa |
69695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 77497 - 77538
Alignment:
| Q |
221 |
accaagtgcaattgaagatgtgtgtgaggtagtgaaagggaa |
262 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||| |
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| T |
77497 |
accaagtgcaattaaacatgtgtgtgaggtagtgaaagggaa |
77538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 29943235 - 29943305
Alignment:
| Q |
7 |
ttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaaca |
77 |
Q |
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|||||||| || ||||| |||||||| |||||||| |||||||| ||| | |||||||||||||| ||||| |
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| T |
29943235 |
ttcagaccaataagtctctgtaacgtggtgatgaagattgtgaccaaagctattgcaaataggttgaaaca |
29943305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 8711024 - 8710960
Alignment:
| Q |
7 |
ttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggtt |
71 |
Q |
| |
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||||| || ||||| |||||||| || ||||||||||| || || ||||| |||||||||||||| |
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| T |
8711024 |
ttcaggccaattagcctttgtaatgtggtgatgaaaatcgtaaccaaaaccattgcaaataggtt |
8710960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 20925983 - 20925919
Alignment:
| Q |
7 |
ttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggtt |
71 |
Q |
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||||| || ||||| |||||||| || ||||||||||| || || ||||| |||||||||||||| |
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| T |
20925983 |
ttcaggccaattagcctttgtaatgtggtgatgaaaatcgtaaccaaaaccattgcaaataggtt |
20925919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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