View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_high_13 (Length: 362)
Name: NF6900_high_13
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 10504213 - 10504550
Alignment:
| Q |
7 |
gtagcagagagatttggcaacaaatttgggtttcttcctctaccaagttttggcaacaaatttggcgccacgatccttgagtatagagagaatcgcaatc |
106 |
Q |
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| T |
10504213 |
gtagcagagagatttggcaacaaatttgggtttcttcctctaccaagttttggcaacaaatttggcgccacgatccttgagtatagagagcatcgcaatc |
10504312 |
T |
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| Q |
107 |
aaatgtgattgccgaattttaattgtggttcccttgtggtcgtatagacnnnnnnnnncttgatgtcgtagctcaaattcttcgtatagatacnnnnnnn |
206 |
Q |
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| T |
10504313 |
aaatgtgattgccgaattttaatcgtggttcccttgtggttgtatagacaaaaaaaa-cttgatgtcgtagctcaaattcttcgtatagatacaaaaaaa |
10504411 |
T |
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| Q |
207 |
ncgttgatgttacaactaaggttgtgataattagggatcttttttagaatatagacttgatttgagagaaggtacaatggaatctcctaagaacacttgt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10504412 |
-cgttgatgttacaactaaggttgtgataattagggatcttttttagaatatagacttgatttgagagaaggtacaatggaatctcctaagaacacttgt |
10504510 |
T |
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| Q |
307 |
ctctcttgtttgctacatgagcttcatacaacatagatga |
346 |
Q |
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| T |
10504511 |
ctctcttgtttgctacatgagcttcatacaacatagatga |
10504550 |
T |
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