View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_high_14 (Length: 359)
Name: NF6900_high_14
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 10010959 - 10010600
Alignment:
| Q |
1 |
caataacatgatcatgataatagtgatcactatcaccaatttcttttgagtttcttaattagatcttgtaattattatgaagtgttcaaactaatctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10010959 |
caataacatgatcatgataatagtgatcactatcaccaatttcttttgagtttcttaattagatcttgtaattattatgaagtgttcaaactaatctttg |
10010860 |
T |
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| Q |
101 |
aaccgaccatgtgccttttcatgaatgtatatagtcatcaattcttctctggatcagtaccaacatctttgtttattatgcatgcagcactttatttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10010859 |
aaccgaccatgtgccttttcatgaatgtatatagtcatcaattcttctctggatcagtaccaacatctttgtttattatgcatgcagcactttatttgat |
10010760 |
T |
|
| Q |
201 |
gtgcttttattttctcttaaccatgttaaagttatctttccccctgatatatctctcatcatcatgaaaaatcatacgaggaaaaaacatttccaaatgt |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10010759 |
gtgcttttattttctcttaaccatggtaaagttatctttctccctgatatatctctcatcatcatgaaaattcatacgaggaaaaaacatttccaaatgt |
10010660 |
T |
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| Q |
301 |
attttgtcaccgtgnnnnnnncataagaa-gggttaaattgtgttagttttttcttcgtt |
359 |
Q |
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||||||| || ||| ||||||| ||||||||||||||||||||||| |||||| |
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| T |
10010659 |
attttgtgacggtgagaaaaatataagaaggggttaaattgtgttagtttttttttcgtt |
10010600 |
T |
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