View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_high_18 (Length: 335)

Name: NF6900_high_18
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_high_18
NF6900_high_18
[»] chr7 (30 HSPs)
chr7 (87-240)||(28197981-28198134)
chr7 (86-214)||(35116848-35116975)
chr7 (84-208)||(36721167-36721291)
chr7 (115-245)||(18797765-18797895)
chr7 (110-222)||(7936027-7936139)
chr7 (110-213)||(30080125-30080227)
chr7 (134-243)||(35494635-35494744)
chr7 (93-198)||(40198825-40198930)
chr7 (83-234)||(8902945-8903097)
chr7 (126-216)||(41332449-41332539)
chr7 (121-244)||(12837866-12837990)
chr7 (124-219)||(10316037-10316132)
chr7 (125-210)||(6727604-6727688)
chr7 (78-211)||(46578947-46579080)
chr7 (119-210)||(7399854-7399945)
chr7 (120-222)||(28517762-28517865)
chr7 (89-152)||(30080221-30080285)
chr7 (133-220)||(30824928-30825015)
chr7 (136-223)||(43189838-43189926)
chr7 (144-243)||(30413332-30413431)
chr7 (134-193)||(35720989-35721048)
chr7 (108-219)||(38663647-38663758)
chr7 (142-216)||(16831285-16831359)
chr7 (161-247)||(18662275-18662361)
chr7 (197-243)||(24516995-24517041)
chr7 (172-222)||(29559213-29559263)
chr7 (143-241)||(38140301-38140399)
chr7 (133-193)||(4232768-4232828)
chr7 (161-213)||(12101378-12101430)
chr7 (189-217)||(40199106-40199134)
[»] chr2 (20 HSPs)
chr2 (88-238)||(39575445-39575595)
chr2 (88-220)||(3855940-3856072)
chr2 (133-206)||(3773037-3773110)
chr2 (87-236)||(1852823-1852972)
chr2 (88-217)||(37534415-37534545)
chr2 (87-216)||(306151-306279)
chr2 (125-192)||(6913416-6913482)
chr2 (139-237)||(42878705-42878801)
chr2 (133-214)||(12880120-12880201)
chr2 (154-243)||(33058771-33058859)
chr2 (173-227)||(29735718-29735772)
chr2 (134-246)||(752114-752226)
chr2 (119-224)||(40141933-40142038)
chr2 (138-212)||(41311737-41311811)
chr2 (88-216)||(40083450-40083579)
chr2 (134-210)||(4640222-4640298)
chr2 (168-244)||(11091435-11091511)
chr2 (182-218)||(11189188-11189224)
chr2 (168-240)||(39792061-39792133)
chr2 (125-213)||(43651470-43651558)
[»] chr4 (29 HSPs)
chr4 (88-219)||(4197190-4197322)
chr4 (94-229)||(13414248-13414383)
chr4 (88-207)||(33873860-33873979)
chr4 (88-190)||(15501413-15501517)
chr4 (125-210)||(26184607-26184692)
chr4 (135-228)||(39946413-39946506)
chr4 (134-247)||(36832780-36832890)
chr4 (115-223)||(43209113-43209221)
chr4 (93-237)||(22677507-22677651)
chr4 (125-205)||(32931505-32931585)
chr4 (133-232)||(6317014-6317112)
chr4 (134-193)||(38868878-38868937)
chr4 (153-243)||(4068359-4068449)
chr4 (168-234)||(44369076-44369142)
chr4 (141-215)||(48051717-48051791)
chr4 (109-210)||(36185562-36185663)
chr4 (174-246)||(3167124-3167196)
chr4 (143-226)||(25234515-25234599)
chr4 (134-193)||(14193863-14193922)
chr4 (119-213)||(27915240-27915334)
chr4 (170-216)||(31917681-31917727)
chr4 (128-213)||(32536869-32536954)
chr4 (138-227)||(51277994-51278083)
chr4 (128-213)||(3775370-3775455)
chr4 (111-152)||(26660637-26660678)
chr4 (134-211)||(26683635-26683712)
chr4 (125-229)||(6167838-6167942)
chr4 (133-229)||(38547444-38547540)
chr4 (142-221)||(39144230-39144309)
[»] chr1 (27 HSPs)
chr1 (87-244)||(17630247-17630402)
chr1 (114-220)||(39527013-39527119)
chr1 (87-213)||(15826215-15826340)
chr1 (84-224)||(2570975-2571114)
chr1 (81-225)||(7444898-7445042)
chr1 (111-234)||(50015530-50015654)
chr1 (110-224)||(27262727-27262842)
chr1 (87-216)||(30984481-30984611)
chr1 (134-223)||(34620605-34620694)
chr1 (199-241)||(41885572-41885614)
chr1 (115-187)||(16966544-16966616)
chr1 (170-237)||(1905712-1905779)
chr1 (90-182)||(4488769-4488857)
chr1 (119-214)||(24980816-24980911)
chr1 (119-214)||(24989574-24989669)
chr1 (109-219)||(52698444-52698554)
chr1 (124-249)||(34040745-34040869)
chr1 (88-227)||(1411671-1411809)
chr1 (172-216)||(26923177-26923221)
chr1 (128-216)||(47235508-47235596)
chr1 (87-237)||(36995204-36995355)
chr1 (137-220)||(51972064-51972147)
chr1 (170-216)||(51139291-51139337)
chr1 (121-210)||(6948197-6948285)
chr1 (168-213)||(38332974-38333019)
chr1 (133-242)||(41048012-41048121)
chr1 (161-237)||(15647259-15647335)
[»] chr3 (17 HSPs)
chr3 (87-220)||(31375490-31375623)
chr3 (87-199)||(48600599-48600709)
chr3 (134-237)||(15985279-15985382)
chr3 (85-249)||(29577231-29577395)
chr3 (133-224)||(31830174-31830265)
chr3 (171-243)||(50173432-50173504)
chr3 (128-218)||(31732064-31732155)
chr3 (138-237)||(42983913-42984012)
chr3 (142-237)||(45153551-45153645)
chr3 (93-183)||(32978065-32978155)
chr3 (161-243)||(54413640-54413724)
chr3 (170-242)||(11434804-11434876)
chr3 (136-234)||(24487773-24487872)
chr3 (128-211)||(31844964-31845047)
chr3 (119-211)||(50037194-50037287)
chr3 (168-216)||(36924600-36924647)
chr3 (174-234)||(54404311-54404371)
[»] chr8 (22 HSPs)
chr8 (87-220)||(7176484-7176617)
chr8 (85-240)||(45185423-45185577)
chr8 (110-224)||(6938969-6939083)
chr8 (115-210)||(38842891-38842986)
chr8 (143-227)||(29602039-29602123)
chr8 (81-234)||(32615819-32615972)
chr8 (133-192)||(472018-472077)
chr8 (87-241)||(11766452-11766607)
chr8 (204-246)||(22575804-22575846)
chr8 (173-222)||(39082528-39082577)
chr8 (134-211)||(42350422-42350499)
chr8 (133-219)||(17106201-17106287)
chr8 (194-249)||(42447420-42447475)
chr8 (128-234)||(7859095-7859201)
chr8 (134-220)||(14955209-14955295)
chr8 (127-209)||(42964814-42964896)
chr8 (128-237)||(13521678-13521787)
chr8 (128-237)||(13611213-13611322)
chr8 (87-220)||(31087061-31087194)
chr8 (197-238)||(32202993-32203034)
chr8 (134-213)||(39900259-39900337)
chr8 (125-240)||(29931099-29931215)
[»] chr5 (19 HSPs)
chr5 (86-216)||(5682320-5682450)
chr5 (87-224)||(1863093-1863230)
chr5 (125-211)||(4822528-4822614)
chr5 (96-192)||(19608774-19608870)
chr5 (154-244)||(950617-950707)
chr5 (87-187)||(26449260-26449360)
chr5 (119-214)||(38328652-38328747)
chr5 (135-246)||(8611721-8611832)
chr5 (168-215)||(27695128-27695175)
chr5 (170-220)||(9765011-9765061)
chr5 (124-244)||(9857801-9857920)
chr5 (134-193)||(14688761-14688820)
chr5 (173-216)||(23245412-23245455)
chr5 (125-234)||(42035766-42035876)
chr5 (138-235)||(6662097-6662194)
chr5 (128-220)||(844736-844828)
chr5 (196-244)||(7112016-7112063)
chr5 (109-185)||(24111558-24111634)
chr5 (142-246)||(34103305-34103408)
[»] chr6 (12 HSPs)
chr6 (233-302)||(32870548-32870618)
chr6 (133-237)||(21273638-21273743)
chr6 (112-220)||(6067499-6067607)
chr6 (174-208)||(22720440-22720474)
chr6 (112-213)||(30775224-30775325)
chr6 (136-247)||(29283202-29283313)
chr6 (125-229)||(30456773-30456877)
chr6 (170-213)||(9752633-9752676)
chr6 (134-216)||(31597514-31597597)
chr6 (125-249)||(17590259-17590384)
chr6 (178-214)||(24265215-24265251)
chr6 (128-228)||(30326704-30326804)
[»] scaffold0006 (1 HSPs)
scaffold0006 (90-221)||(159130-159261)
[»] scaffold0954 (1 HSPs)
scaffold0954 (110-221)||(47-158)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 240
Target Start/End: Complemental strand, 28198134 - 28197981
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    |||||||||||||||  ||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||| | |||||||| ||||||||    
T  28198134 cacttgtttagaagtccaaagaagaaactttttcttggaaattgtgtattcaagacattgaaacttcaaaaagaaactttttctacataaattttataaa 28198035  T
Q  187 ttattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataa 240  Q
    |||||| |||||||||||||||||||||||| |||||| |||| ||||||||||    
T  28198034 ttatttcctcttttgaatccttaacaagtgcactaagggcacttgttagcataa 28197981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 35116848 - 35116975
Alignment:
Q  86 acacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 185  Q
    |||||||||||  ||| |||| ||||||||||| || | || |||| ||||||| |||||||||||||||||||||| ||| | ||||||||||||||||    
T  35116848 acacttgtttatgagtcaaaagaagaaactttt-ctcacaatttgtgtattcaatacattgaaacttcaaaaaggaaatttttctacataaaatttataa 35116946  T
Q  186 attattttctcttttgaatccttaacaag 214  Q
    ||||||| || ||||||||||||||||||    
T  35116947 attatttccttttttgaatccttaacaag 35116975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 36721291 - 36721167
Alignment:
Q  84 ggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttat 183  Q
    |||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||||||||| ||| || ||||| ||||||| | ||||||||| ||||    
T  36721291 ggacacttgtttagaagtcaaaagaagaaactctttcttagaaaatgtgtattcaacacatttaaatttaaaaaaagaactttttatacataaaacttat 36721192  T
Q  184 aaattattttctcttttgaatcctt 208  Q
    || | |||| |||||||||||||||    
T  36721191 aagtcatttcctcttttgaatcctt 36721167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 18797895 - 18797765
Alignment:
Q  115 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 214  Q
    ||||| || |||||||| ||||||||  |||||||||| ||||| |||| ||  ||||||||||||||||||| ||||||| ||||||||||||||| ||    
T  18797895 ttttttttggaaattgtgtattcaacgtattgaaacttaaaaaaagaacatttattacataaaatttataaatcattttcttttttgaatccttaactag 18797796  T
Q  215 tgccctaaggacactcgttagcataacccta 245  Q
    || | ||||  ||||||||||||||||||||    
T  18797795 tgtcgtaagagcactcgttagcataacccta 18797765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 7936027 - 7936139
Alignment:
Q  110 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 209  Q
    |||||||||| || | |||||| |||||||||||||||||||||||||| ||||| | | | ||||| |||||||||  |||| ||||||||||||||||    
T  7936027 gaaacttttttttgggaattgtgtattcaacacattgaaacttcaaaaatgaactatttctgcataagatttataaaccatttcctcttttgaatcctta 7936126  T
Q  210 acaagtgccctaa 222  Q
    |||||||||||||    
T  7936127 acaagtgccctaa 7936139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 30080227 - 30080125
Alignment:
Q  110 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 209  Q
    |||||||||||||||||||| | ||||||||||||| ||||||  |||| ||||||| | |||||||||||| ||||||||||| ||| || ||||||||    
T  30080227 gaaactttttcttagaaattatgtattcaacacattaaaactt-taaaatgaactttttctacataaaatttctaaattattttttctcttaaatcctta 30080129  T
Q  210 acaa 213  Q
    ||||    
T  30080128 acaa 30080125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 35494744 - 35494635
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtt 233  Q
    |||||| ||||||||| ||||||||| |||||| |||| ||||||||||| ||||||||  ||| |||||||||||||||  ||||| | ||||  ||||    
T  35494744 attcaaaacattgaaatttcaaaaagaaactttttttatataaaatttatgaattatttcttctattgaatccttaacaaacgccctcaagacaaccgtt 35494645  T
Q  234 agcataaccc 243  Q
    |||| |||||    
T  35494644 agcaaaaccc 35494635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 40198825 - 40198930
Alignment:
Q  93 tttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 192  Q
    |||||||||  ||| |||||||||||| ||  ||||||| |||||||||| ||||||||| |||||| ||| || ||||||||| ||||| |||| ||||    
T  40198825 tttagaagtctaaagaagaaacttttttttgaaaattgtgtattcaacacgttgaaactttaaaaagtaacattttttacataagatttacaaataattt 40198924  T
Q  193 tctctt 198  Q
    ||||||    
T  40198925 tctctt 40198930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 8902945 - 8903097
Alignment:
Q  83 aggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaac-ttcaaaaaggaactttatttacataaaattt 181  Q
    |||||||||| ||||||||| |||  | ||| ||| | |||||| |||| |||| |||  |||||| | || |||||| ||||||||||| |||||| ||    
T  8902945 aggacacttgattagaagttgaaattaaaaattttattttagaatttgtgtatttaacgtattgaagcattaaaaaagcaactttatttatataaaagtt 8903044  T
Q  182 ataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 234  Q
    || |||| ||||   ||||||||| |||||||||| |||||||||||||||||    
T  8903045 atcaattgtttttatttttgaatctttaacaagtgtcctaaggacactcgtta 8903097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 41332539 - 41332449
Alignment:
Q  126 aattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    |||||| |||| ||||  ||||||||| || || |||||||||||| ||||||||||||||||||||||| ||||  ||| ||||||||||    
T  41332539 aattgtatatttaacattttgaaactttaataaagaactttatttatataaaatttataaattattttcttttttagatcattaacaagtg 41332449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 12837990 - 12837866
Alignment:
Q  121 ttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctt-ttgaatccttaacaagtgccc 219  Q
    ||||||||| | || |||| |||||||||| | |||||| ||||| || |||||||||||||| ||||  ||||| || |||||||||||||||||| ||    
T  12837990 ttagaaattatgtaatcaagacattgaaacattaaaaagcaacttaatctacataaaatttatcaatt-gtttctattcttgaatccttaacaagtgtcc 12837892  T
Q  220 taaggacactc-gttagcataaccct 244  Q
    ||||||| ||| |||| |||||||||    
T  12837891 taaggaccctctgttaacataaccct 12837866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 10316132 - 10316037
Alignment:
Q  124 gaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccc 219  Q
    |||||||| || ||||| |||||||| || ||||| |||| || | ||| |||||||||||||||||||  ||||||||| |||||||| ||||||    
T  10316132 gaaattgtgtaatcaacgcattgaaattttaaaaatgaacattttgtacttaaaatttataaattatttattcttttgaaaccttaacatgtgccc 10316037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 6727688 - 6727604
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 210  Q
    ||||||| ||||||||| |||||||||| | ||| ||| ||| | |||||||||||| ||||| |||||||||||||||| |||||    
T  6727688 aaattgtgtattcaacagattgaaacttaataaaagaattttttctacataaaattt-taaataattttctcttttgaattcttaa 6727604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 46578947 - 46579080
Alignment:
Q  78 tctttaggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaa 177  Q
    ||||| || |||||||||||||||| ||| |||||||||||| ||| || |||| | ||||  ||||||||| || |||| | ||| || | | ||| ||    
T  46578947 tctttgggccacttgtttagaagtttaaagaagaaactttttattaaaatttgtgttttcactacattgaaaattaaaaatgaaacattttctccatgaa 46579046  T
Q  178 atttataaattattttctcttttgaatccttaac 211  Q
    ||| ||||||||||| || |||| ||||||||||    
T  46579047 attcataaattatttcctattttaaatccttaac 46579080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 7399854 - 7399945
Alignment:
Q  119 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttc-tcttttgaatccttaa 210  Q
    |||| ||| |||| |||||||||||||||||| | |||||| |||||| || |||| ||||||||||||||||| | | ||||||||||||||    
T  7399854 tcttggaagttgtttattcaacacattgaaacattaaaaagtaacttttttaacat-aaatttataaattatttcctttttttgaatccttaa 7399945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 28517762 - 28517865
Alignment:
Q  120 cttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttc-tcttttgaatccttaacaagtgcc 218  Q
    |||| ||||| | ||||||||  |||||||  | |||||| |||||| ||||||| |||||||  |||||||| | | ||||||||||||||||||||||    
T  28517762 cttaaaaattatatattcaacttattgaaagattaaaaagcaactttttttacatgaaatttaacaattatttccattttttgaatccttaacaagtgcc 28517861  T
Q  219 ctaa 222  Q
    ||||    
T  28517862 ctaa 28517865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 30080285 - 30080221
Alignment:
Q  89 cttgtttagaagttaaaacaagaaacttttt-cttagaaattgtctattcaacacattgaaactt 152  Q
    |||||||||||||| ||| || ||| ||||| |||||||||||| |||| |||||||||||||||    
T  30080285 cttgtttagaagtttaaagaataaatttttttcttagaaattgtgtatttaacacattgaaactt 30080221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 30824928 - 30825015
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccct 220  Q
    ||||||||||||||||| || |||||| |||||||| | ||||||| || ||||||| ||||| | |||||||| ||||| ||||||||    
T  30824928 tattcaacacattgaaaatttaaaaagtaactttatctgcataaaacttgtaaatta-tttctatatttgaatctttaactagtgccct 30825015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 43189838 - 43189926
Alignment:
Q  136 tcaacacattgaaacttcaaaaaggaactttattt-acataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 223  Q
    |||| ||||||||| || |||||| |||||| ||| ||||||||||||||||||| ||    ||||||||| ||||| |||||||||||    
T  43189838 tcaatacattgaaaatttaaaaagtaacttttttttacataaaatttataaattacttctatttttgaatcgttaactagtgccctaag 43189926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 30413332 - 30413431
Alignment:
Q  144 ttgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 243  Q
    |||||||||  |||| ||||||| |  |||||||| ||||| ||||||| ||||||| ||| ||||| |||||| | ||| ||| | |||||||||||||    
T  30413332 ttgaaacttttaaaatgaactttttacacataaaacttatacattatttgctcttttaaatgcttaataagtgctcgaagaacattagttagcataaccc 30413431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 35720989 - 35721048
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 193  Q
    |||||||| ||||||| || |||||| |||||||| |||||||||||| |||| ||||||    
T  35720989 attcaacatattgaaagtttaaaaagtaactttatctacataaaatttgtaaactatttt 35721048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 38663647 - 38663758
Alignment:
Q  108 aagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcct 207  Q
    |||||| ||| | ||| ||||||| |||| ||  ||||||||||| |||||| |||||| | ||  |||||||||| ||||||||    ||||| |||||    
T  38663647 aagaaattttgttttaaaaattgtgtatttaatgcattgaaactttaaaaagtaactttttatatttaaaatttatcaattatttctatttttgtatcct 38663746  T
Q  208 taacaagtgccc 219  Q
    ||||||||||||    
T  38663747 taacaagtgccc 38663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 16831285 - 16831359
Alignment:
Q  142 cattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    |||| |||||| |||||| |||||| ||||  | |||||||| ||||||||||  ||||| ||||||||||||||    
T  16831285 cattaaaactttaaaaagtaactttttttatttgaaatttatcaattattttcatttttgtatccttaacaagtg 16831359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 18662361 - 18662275
Alignment:
Q  161 aactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaat 247  Q
    |||||| | ||| |||||||||| ||| ||||||  ||||| ||||||||||||| ||||||  |||||  |||||| |||||||||    
T  18662361 aactttttctacttaaaatttatcaatgattttcatttttgtatccttaacaagtaccctaaaaacactttttagcaaaaccctaat 18662275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 24516995 - 24517041
Alignment:
Q  197 ttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 243  Q
    |||| |||| |||||||||||| ||||||||||||||||||| ||||    
T  24516995 ttttaaatctttaacaagtgccttaaggacactcgttagcatgaccc 24517041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 29559213 - 29559263
Alignment:
Q  172 cataaaatttataaattattttctcttttgaatccttaacaagtgccctaa 222  Q
    |||||||||||| ||||||||    ||||||||||||||||||||||||||    
T  29559213 cataaaatttatcaattatttatatttttgaatccttaacaagtgccctaa 29559263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 38140399 - 38140301
Alignment:
Q  143 attgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataac 241  Q
    |||||||  |||||||| ||| || | |||||||||||||  |||| ||| ||  |||||||| ||||| |||||||||| |||| | |||||||||||    
T  38140399 attgaaatatcaaaaagtaacattttctacataaaatttaacaattgtttccttctttgaatctttaactagtgccctaaagacatttgttagcataac 38140301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 4232768 - 4232828
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 193  Q
    ||||||||||||||||| || |||||| || ||||| || |||||| || |||||||||||    
T  4232768 tattcaacacattgaaagtttaaaaagtaattttatctatataaaacttgtaaattatttt 4232828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 12101430 - 12101378
Alignment:
Q  161 aactttatttacataaaatttataaattattttctcttttgaatccttaacaa 213  Q
    |||||| ||||||||||||||||  | |||||||| |||| ||||||||||||    
T  12101430 aactttttttacataaaatttatccaatattttctttttttaatccttaacaa 12101378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 40199106 - 40199134
Alignment:
Q  189 attttctcttttgaatccttaacaagtgc 217  Q
    |||||||||||||||||||||||||||||    
T  40199106 attttctcttttgaatccttaacaagtgc 40199134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 39575595 - 39575445
Alignment:
Q  88 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 187  Q
    ||||||||||||||  ||| ||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  39575595 acttgtttagaagtccaaataagaaactttttcttggaaattgtgtatttaacacattgaaacttcaaaaagaaactttttatacataaaatttataaat 39575496  T
Q  188 tattttctcttttgaatccttaacaagtgccctaaggacactcgttagcat 238  Q
    ||||| ||||||||||||||||| |||||||||||||  ||| ||||||||    
T  39575495 tatttcctcttttgaatccttaataagtgccctaagggaacttgttagcat 39575445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 3855940 - 3856072
Alignment:
Q  88 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 187  Q
    ||||| || |||||| ||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||   ||||| |||||||||| |||||||||    
T  3855940 acttgatttgaagtttaaagaagaaattttttcttaaaaattgtgtattcaacacattgaaacttcaaaaatatactttttttacataaattttataaat 3856039  T
Q  188 tattttctcttttgaatccttaacaagtgccct 220  Q
    ||||| ||||||| ||| |||||||||||||||    
T  3856040 tatttcctcttttaaatacttaacaagtgccct 3856072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 3773037 - 3773110
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcc 206  Q
    ||||| ||| |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3773037 tattcgacatattgaaactttaaaaatgaactttatctacataaaatttataaattattttctcttttgaatcc 3773110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 1852823 - 1852972
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    |||||||| ||||||| |||  ||||||||| |||| |||||| | || |||| | |||||||  |  ||||| || ||| |||| ||||||||||| ||    
T  1852823 cacttgttaagaagttcaaaatagaaactttatcttggaaattatgtaatcaatatattgaaatattgaaaagcaattttttttatataaaatttatcaa 1852922  T
Q  187 ttattttctcttttgaatccttaacaagtgccctaaggacactcgttagc 236  Q
    || |||||| ||||||||||||||||| | | ||||||||||| ||||||    
T  1852923 ttgttttcttttttgaatccttaacaaatacgctaaggacacttgttagc 1852972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 37534415 - 37534545
Alignment:
Q  88 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatt-tacataaaatttataaa 186  Q
    ||||||| ||||||  ||| || ||| ||||||||  ||||| | ||||||||| ||| |||||||||||||  | ||| || |||||||| ||||||||    
T  37534415 acttgttcagaagtctaaaaaataaaatttttcttgaaaattttgtattcaacagattaaaacttcaaaaagatatttttttctacataaattttataaa 37534514  T
Q  187 ttattttctcttttgaatccttaacaagtgc 217  Q
    ||||||  ||| |||||||||||||||||||    
T  37534515 ttatttattctcttgaatccttaacaagtgc 37534545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 306279 - 306151
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    |||||||||||||||||||| || |||  |||| ||||||||||| |||| |||| ||||||| || |||| | |  ||| | ||||| |||||||||||    
T  306279 cacttgtttagaagttaaaagaaaaaatattttattagaaattgtgtattgaacatattgaaaatttaaaatgaatttttttctacat-aaatttataaa 306181  T
Q  187 ttattttctcttttgaatccttaacaagtg 216  Q
    | |||| |||||||||||  ||||||||||    
T  306180 tcatttcctcttttgaataattaacaagtg 306151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 6913482 - 6913416
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 192  Q
    ||||||| |||||||||||||||||||| | ||| ||||||| | |||||||||||||||||||||||    
T  6913482 aaattgtgtattcaacacattgaaacttaataaaagaacttt-tctacataaaatttataaattattt 6913416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 42878705 - 42878801
Alignment:
Q  139 acacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 237  Q
    ||||||||||| ||  |||||  ||||| |||||||||||||| ||||| ||||||  |||||||| ||||||||||| |||||||||||| |||||||    
T  42878705 acacattgaaagtttgaaaagtgacttt-tttacataaaatttgtaaatcattttcatttttgaattcttaacaagtg-cctaaggacactagttagca 42878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 12880120 - 12880201
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 214  Q
    ||||||||||||||||| || |||||| || ||| | ||||||||| |||| |||||||| |  ||||||||||||||||||    
T  12880120 tattcaacacattgaaattttaaaaagtaattttttctacataaaacttatcaattatttccatttttgaatccttaacaag 12880201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 33058859 - 33058771
Alignment:
Q  154 aaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 243  Q
    |||||| ||||||  |||||||| |||||||||| |||| || |||||||||||||||||||| ||| |||||||| |||| | ||||||    
T  33058859 aaaaagaaacttttattacataagatttataaatcatttccttttttgaatccttaacaagtgtcct-aggacacttgttaccctaaccc 33058771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 29735772 - 29735718
Alignment:
Q  173 ataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 227  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| |||| ||||    
T  29735772 ataaaatttataaattatttcctcttttaaatcattaacaagtgctctaaagaca 29735718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 752226 - 752114
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctttt-gaatccttaacaagtgccctaaggacactcgt 232  Q
    ||||||||||||||||||| |||||| || ||| | ||||||||| | |  ||||| ||||| |||| |||| |||||||||||||||||||  ||| ||    
T  752226 attcaacacattgaaacttgaaaaagtaattttttctacataaaactaaccaatta-tttctattttagaattcttaacaagtgccctaagggtacttgt 752128  T
Q  233 tagcataaccctaa 246  Q
    |||||  |||||||    
T  752127 tagcaagaccctaa 752114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 40142038 - 40141933
Alignment:
Q  119 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgcc 218  Q
    ||||| || |||| |||||||| |||||||||  ||||||| |||||||| ||||| ||| |||||| || |||    ||||  ||||||||||||||||    
T  40142038 tcttaaaatttgtatattcaactcattgaaacaccaaaaagcaactttatctacatgaaagttataatttgtttctatttttttatccttaacaagtgcc 40141939  T
Q  219 ctaagg 224  Q
    ||||||    
T  40141938 ctaagg 40141933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 41311737 - 41311811
Alignment:
Q  138 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaaca 212  Q
    |||| ||||||| || |||||| || ||| | |||||||||||||||||| |||| |  ||||||||||||||||    
T  41311737 aacaaattgaaagtttaaaaagtaattttttctacataaaatttataaatcatttacatttttgaatccttaaca 41311811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 40083450 - 40083579
Alignment:
Q  88 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatt-tacataaaatttataaa 186  Q
    ||||||||||||||| |||  | ||  ||| ||||||||||||| ||||||| ||||||||||  ||||||| || ||| ||  ||| ||||||||| |     
T  40083450 acttgtttagaagtttaaagtaaaagttttatcttagaaattgtgtattcaatacattgaaacaacaaaaagtaatttttttcaacaaaaaatttatcag 40083549  T
Q  187 ttattttctcttttgaatccttaacaagtg 216  Q
    ||||||    ||||||||| ||||||||||    
T  40083550 ttatttctatttttgaatctttaacaagtg 40083579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 4640222 - 4640298
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 210  Q
    ||||||||| |||||| || ||||||  ||||| | ||| ||||| |||||||||||||||  |||| |||||||||    
T  4640222 attcaacacgttgaaaatttaaaaagttactttttctacgtaaaacttataaattattttcatttttaaatccttaa 4640298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 11091511 - 11091435
Alignment:
Q  168 tttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 244  Q
    |||||||||||||||| |||||||||   ||| ||||| |||||||||| | ||||| || | |||||||| |||||    
T  11091511 tttacataaaatttattaattatttttattttagaatctttaacaagtgtcttaagggcatttgttagcatcaccct 11091435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 11189224 - 11189188
Alignment:
Q  182 ataaattattttctcttttgaatccttaacaagtgcc 218  Q
    |||||||||||||| |||| |||||||||||||||||    
T  11189224 ataaattattttcttttttaaatccttaacaagtgcc 11189188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 39792061 - 39792133
Alignment:
Q  168 tttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataa 240  Q
    ||||||||||||||   ||||||||  | |||||||| ||||||||||| ||||| |||| | ||||||||||    
T  39792061 tttacataaaattttacaattatttctttttttgaattcttaacaagtgtcctaaagacatttgttagcataa 39792133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 43651470 - 43651558
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaa 213  Q
    ||||||| ||||||  || |||||| || |||||  || ||| | |||||||||||||  ||||||||||||||||||||  |||||||    
T  43651470 aaattgtgtattcagtacgttgaaattttaaaaaataaatttttatacataaaatttaacaattattttctcttttgaatatttaacaa 43651558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 4197322 - 4197190
Alignment:
Q  88 acttgtttagaagttaaaacaagaaacttttt-cttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||| ||||||||| |||||  |||||| | |||||||||||||||||    
T  4197322 acttgtttagaagttaaaagaagaaacttttttcttggaaattgtgtattcaacaccttgaaacttaaaaaaataactttttctacataaaatttataaa 4197223  T
Q  187 ttattttctcttttgaatccttaacaagtgccc 219  Q
    | |||| ||||||||||||||||||||||||||    
T  4197222 tcatttcctcttttgaatccttaacaagtgccc 4197190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 13414383 - 13414248
Alignment:
Q  94 ttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 193  Q
    ||||||||  ||| ||||||||||||||| |||||||| |||| |||   |||||||||||||||  |||||| ||||||||||||||||||||||||      
T  13414383 ttagaagtccaaataagaaactttttcttggaaattgtgtatttaacctgttgaaacttcaaaaataaactttttttacataaaatttataaattattcc 13414284  T
Q  194 ctcttttgaatccttaacaagtgccctaaggacact 229  Q
    |||||||||||| |||||||||||||||||| ||||    
T  13414283 ctcttttgaatcattaacaagtgccctaagggcact 13414248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 33873979 - 33873860
Alignment:
Q  88 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 187  Q
    |||||||||||||| |||| |||||||||||| || |||||||| | || ||| ||||||||||| ||||| ||||| | | ||||||||||||||| ||    
T  33873979 acttgtttagaagtcaaaagaagaaacttttttttggaaattgtgtttttaacgcattgaaacttaaaaaaagaactatttctacataaaatttatagat 33873880  T
Q  188 tattttctcttttgaatcct 207  Q
     |||| ||||||||||||||    
T  33873879 catttcctcttttgaatcct 33873860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 15501413 - 15501517
Alignment:
Q  88 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaactt--caaaaaggaactttatttacataaaatttataa 185  Q
    |||||||||||||| |||| || | ||||| ||||| ||||||| |||||| |||||||||||||   |||||  |||||||||||||||||||||||||    
T  15501413 acttgtttagaagtcaaaagaaaatactttatcttataaattgtgtattcatcacattgaaacttaaaaaaaaataactttatttacataaaatttataa 15501512  T
Q  186 attat 190  Q
    |||||    
T  15501513 attat 15501517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 26184692 - 26184607
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 210  Q
    ||||||| |||||||  |||||||||||||||||| |||||| | ||| |||||||||||||| |||| |||||| ||||| ||||    
T  26184692 aaattgtgtattcaaatcattgaaacttcaaaaagaaactttttatacttaaaatttataaataatttcctctttagaatcattaa 26184607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 39946413 - 39946506
Alignment:
Q  135 ttcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacac 228  Q
    |||| |||||||||| || |||| | ||| || ||||||| ||||| ||||||||||| |||||||| ||||||||||| |||| |||||||||    
T  39946413 ttcaccacattgaaaatttaaaatgaaaccttctttacatgaaattcataaattatttcctcttttgcatccttaacaaatgccttaaggacac 39946506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 36832890 - 36832780
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtt 233  Q
    |||||| |||||||||||| ||||| ||||||| | |||||||||||||||| ||| |||||  ||||| | ||||||  ||||||||||| |||| |||    
T  36832890 attcaatacattgaaactt-aaaaatgaactttttctacataaaatttataattta-tttct-atttgagttcttaacttgtgccctaagggcacttgtt 36832794  T
Q  234 agcataaccctaat 247  Q
    || |||||||||||    
T  36832793 aggataaccctaat 36832780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 43209113 - 43209221
Alignment:
Q  115 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttct-cttttgaatccttaacaa 213  Q
    ||||||||| || |||| ||||||  ||||||||||||||||||| |||||| | || | ||||| | ||||||||||| | ||||| ||| ||||||||    
T  43209113 tttttcttaaaagttgtgtattcagtacattgaaacttcaaaaagaaactttttctataaaaaatct-taaattattttttacttttaaattcttaacaa 43209211  T
Q  214 gtgccctaag 223  Q
    ||||||||||    
T  43209212 gtgccctaag 43209221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 22677507 - 22677651
Alignment:
Q  93 tttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 192  Q
    |||||||||  ||| |||||||||||| || ||| |||| | ||||  ||||||||| || |||| | |||  | ||||||| |||||  ||||||||||    
T  22677507 tttagaagtctaaagaagaaactttttattggaacttgtgttttcactacattgaaaattaaaaatgaaaccctttttacattaaattcgtaaattattt 22677606  T
Q  193 tctcttttgaatccttaacaagtgccctaaggacactcgttagca 237  Q
     |||||||||||| ||||  | |||||| ||| ||||||||||||    
T  22677607 cctcttttgaatcattaatcattgcccttagggcactcgttagca 22677651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 32931585 - 32931505
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatc 205  Q
    ||||||| |||||||| |||||||  || |||||| ||| || |||| ||||||||||||||| | |||||||||||||||    
T  32931585 aaattgtgtattcaacccattgaagttttaaaaagaaacattttttatataaaatttataaataactttctcttttgaatc 32931505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 6317014 - 6317112
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgt 232  Q
    ||||||||| |||||||| | |||||  |||||| |  | ||||||||||| |||||||| || ||||||||| ||||| ||||||||||||| ||||||    
T  6317014 tattcaacatattgaaacattaaaaaataactttttcaatataaaatttatcaattatttcct-ttttgaatctttaactagtgccctaaggatactcgt 6317112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 38868878 - 38868937
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 193  Q
    |||||||||||||||| || |||||| |||||| | ||||||||| ||||||||||||||    
T  38868878 attcaacacattgaaagtttaaaaagtaactttttctacataaaacttataaattatttt 38868937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 4068359 - 4068449
Alignment:
Q  153 caaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 243  Q
    ||||||| |||||| | |||||| ||||||  |||| |||  | ||||||||||||||| |||||||||||| |||| ||||||| |||||    
T  4068359 caaaaagtaactttttctacatagaatttaacaattgtttctttttttgaatccttaactagtgccctaagggcacttgttagcaaaaccc 4068449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 44369076 - 44369142
Alignment:
Q  168 tttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 234  Q
    |||| ||||||||||  ||||||||||| |||| ||||||||||||||||| |||| ||||| ||||    
T  44369076 tttatataaaatttaacaattattttctttttttaatccttaacaagtgccttaagaacacttgtta 44369142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 48051717 - 48051791
Alignment:
Q  141 acattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagt 215  Q
    ||||||||||  ||||||| |||||| | |||||||||||||| ||||||||    |||||||||||||||||||    
T  48051717 acattgaaacaacaaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaacaagt 48051791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 36185562 - 36185663
Alignment:
Q  109 agaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctt 208  Q
    ||||||||||| | || |||||| |||| || || |||||||||||||| | || ||| | |||||||| ||| |||||  ||||||||||| |||||||    
T  36185562 agaaactttttatgaggaattgtatattaaatacgttgaaacttcaaaacgaaattttttctacataaattttttaaatccttttctcttttaaatcctt 36185661  T
Q  209 aa 210  Q
    ||    
T  36185662 aa 36185663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 3167196 - 3167124
Alignment:
Q  174 taaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaa 246  Q
    |||||||||  ||||||||||  ||||| |||||||||||||| ||||| |||||| |||| || ||||||||    
T  3167196 taaaatttaccaattattttcatttttgtatccttaacaagtgtcctaaagacacttgttaacaaaaccctaa 3167124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 25234599 - 25234515
Alignment:
Q  143 attgaaacttcaaaaaggaactttatt-tacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggac 226  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||   ||  |||||| |||||||||||| || | |||||||    
T  25234599 attgaaatttcaaaaaggaacttttttctacataaaatttataaatcggttattcttttaaatccttaacaaatgtcataaggac 25234515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 14193922 - 14193863
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 193  Q
    |||||| ||||||||| || |||||| ||| || | ||||||||||||||||||||||||    
T  14193922 attcaagacattgaaagtttaaaaagtaacattttctacataaaatttataaattatttt 14193863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 27915240 - 27915334
Alignment:
Q  119 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaa 213  Q
    ||||| || |||| ||||||||||||| |||  | |||||  |||||| || ||||||||||||| |||||||| ||| |||||||||||||||||    
T  27915240 tcttaaaagttgtgtattcaacacattcaaatattaaaaactaacttttttaacataaaatttatcaattatttctct-ttttgaatccttaacaa 27915334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 31917681 - 31917727
Alignment:
Q  170 tacataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    ||||||||||||||||||||| ||   ||||||||||||||||||||    
T  31917681 tacataaaatttataaattatatttatttttgaatccttaacaagtg 31917727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 32536954 - 32536869
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaa-atttataaattattttctcttttgaatccttaacaa 213  Q
    |||| ||||||||| ||||||| ||  ||||  |||||| | |||||||| |||||||||| ||| |||||||||||||||||||||    
T  32536954 ttgtatattcaacaaattgaaatttttaaaaa-aactttttctacataaagatttataaatcattctctcttttgaatccttaacaa 32536869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 51277994 - 51278083
Alignment:
Q  138 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccctaaggaca 227  Q
    |||||||||||| || |||||  || ||||| ||||||||| || ||||||| ||||| | |||||||| ||||| |||||||||||||||    
T  51277994 aacacattgaaagtttaaaaattaaatttatctacataaaacttgtaaatta-tttctatatttgaatctttaactagtgccctaaggaca 51278083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 3775370 - 3775455
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaa 213  Q
    |||| |||| ||||||||||||| |||||||  ||| || | |||||||||  ||| |||| |||||| |||| ||||||||||||    
T  3775370 ttgtatattaaacacattgaaacatcaaaaaacaacattttctacataaaaactatcaattgttttcttttttaaatccttaacaa 3775455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 26660678 - 26660637
Alignment:
Q  111 aaactttttcttagaaattgtctattcaacacattgaaactt 152  Q
    |||||||||||| |||||||| ||||||||||||| ||||||    
T  26660678 aaactttttcttggaaattgtgtattcaacacattcaaactt 26660637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 26683712 - 26683635
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 211  Q
    |||||| ||||||||| || |||||| ||  || | ||||||||||||||||||||||| |  |||| ||||||||||    
T  26683712 attcaagacattgaaaatttaaaaagtaatattttctacataaaatttataaattatttccatttttaaatccttaac 26683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 6167838 - 6167942
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaagg 224  Q
    |||||||  ||||||  ||||||||||| |||| | |||||| ||||| ||||||| || |||||||||   || || || |||||||||||| || |||    
T  6167838 aaattgtgcattcaatgcattgaaactttaaaatgtaactttttttacttaaaattcatcaattatttttatttgtgtattcttaacaagtgctctgagg 6167937  T
Q  225 acact 229  Q
    |||||    
T  6167938 acact 6167942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 38547540 - 38547444
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacact 229  Q
    |||||||||||||||||  | |||||| |  ||| || ||||||||||||| ||||||||  | |||| |||| ||||| ||||||| |||| ||||    
T  38547540 tattcaacacattgaaatattaaaaagtagtttttttaacataaaatttatcaattatttctttttttaaatctttaactagtgcccgaagggcact 38547444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 39144309 - 39144230
Alignment:
Q  142 cattgaaacttcaaaaag-gaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgcccta 221  Q
    ||||||||||| |||||| ||  ||||||| |||||||||||| |||||||||   ||||||||| |||| ||||||||||    
T  39144309 cattgaaactttaaaaagtgatttttattt-cataaaatttatcaattatttttatttttgaatctttaataagtgcccta 39144230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 17630247 - 17630402
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaa-ctttatttacataaaatttataa 185  Q
    |||||||||||||||| ||| ||||||||||||||| | |||||| ||||||| |||||||||||| |||||  || |||| | ||||||||||||||||    
T  17630247 cacttgtttagaagttcaaagaagaaactttttcttgggaattgtatattcaagacattgaaacttaaaaaaaaaaactttttctacataaaatttataa 17630346  T
Q  186 attattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 244  Q
    ||||||| ||||||| ||||||||||||||||||| ||| |||   |||||||||||||    
T  17630347 attatttcctcttttaaatccttaacaagtgcccttagggcac---ttagcataaccct 17630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 39527013 - 39527119
Alignment:
Q  114 ctttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaa 213  Q
    |||| |||| ||||||||  ||||||| |||||||||  |||||||||||||| | ||||||||||||||  ||||||| |  |||||||||||||||||    
T  39527013 ctttatcttggaaattgtgcattcaacccattgaaacaacaaaaaggaactttttctacataaaatttatcgattatttccaattttgaatccttaacaa 39527112  T
Q  214 gtgccct 220  Q
    |||||||    
T  39527113 gtgccct 39527119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 15826215 - 15826340
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    ||||||||||||||| |||| |||||  ||||||||||||||||| ||||||||  ||||||||||  ||||| || ||| | |||||||||  | ||||    
T  15826215 cacttgtttagaagtcaaaataagaatttttttcttagaaattgtgtattcaacctattgaaactttgaaaagcaa-tttttctacataaaacatgtaaa 15826313  T
Q  187 ttattttctcttttgaatccttaacaa 213  Q
    | |||| |||||||||||  |||||||    
T  15826314 tcatttactcttttgaatgtttaacaa 15826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 224
Target Start/End: Complemental strand, 2571114 - 2570975
Alignment:
Q  84 ggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttat 183  Q
    ||||||||||| ||||||| ||| | |||| ||| |||| | |||  | |||||||||||||||||||| |||||  |||| ||| ||||||||| || |    
T  2571114 ggacacttgttaagaagtttaaaaaggaaattttatcttgggaatgatgtattcaacacattgaaactttaaaaa-taactatatctacataaaacttgt 2571016  T
Q  184 aaattattttctct-tttgaatccttaacaagtgccctaagg 224  Q
    |||||| ||||| | |||||||||||||| ||||||||||||    
T  2571015 aaatta-tttctatatttgaatccttaactagtgccctaagg 2570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 7444898 - 7445042
Alignment:
Q  81 ttaggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatt 180  Q
    ||||| |||||| | |||| || ||| |||||||||| ||||   | |||| |||||||||||||||||  |||||||| |||||| | ||||| ||| |    
T  7444898 ttagggcacttgataagaaattcaaagaagaaactttatcttgagatttgtgtattcaacacattgaaatatcaaaaagcaactttttatacatgaaagt 7444997  T
Q  181 tataaattattttctctttt-gaatccttaacaagtgccctaagga 225  Q
    ||| ||||| ||||| |||| ||||| |||||||||||||||||||    
T  7444998 tatcaatta-tttctattttagaatctttaacaagtgccctaagga 7445042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 50015654 - 50015530
Alignment:
Q  111 aaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatcctta 209  Q
    ||||||| |||| ||| |||| ||||||||||||| |||  |||||||| |||||| | |||| ||||||||| |||| ||| | | |||||||| ||||    
T  50015654 aaactttgtcttggaatttgtatattcaacacattcaaaaatcaaaaagtaactttttatacaaaaaatttatcaattgtttctattttttgaattctta 50015555  T
Q  210 acaagtgccctaaggacactcgtta 234  Q
    ||||||  | |||||||||||||||    
T  50015554 acaagtatcataaggacactcgtta 50015530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 27262842 - 27262727
Alignment:
Q  110 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatcctt 208  Q
    |||| ||| |||||||| |||| ||||||||||||| |||| | |||||| || ||| | ||||||||| |||| |||| ||| | | ||||||||||||    
T  27262842 gaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtttctattttttgaatcctt 27262743  T
Q  209 aacaagtgccctaagg 224  Q
    |||||||| |||||||    
T  27262742 aacaagtgtcctaagg 27262727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 30984481 - 30984611
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaa-ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 185  Q
    ||||||||||||||| |||| |||||   |||| || |||| |||| |||| |||| ||| ||||||||||||  |||||| | ||||||||| ||||||    
T  30984481 cacttgtttagaagtcaaaagaagaattattttttttgaaaattgtgtatttaacaaattaaaacttcaaaaataaactttttctacataaaacttataa 30984580  T
Q  186 attattttctcttttgaatccttaacaagtg 216  Q
    || ||||  ||||||||| | ||||||||||    
T  30984581 atcatttcatcttttgaaactttaacaagtg 30984611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 34620694 - 34620605
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctttt-gaatccttaacaagtgccctaag 223  Q
    ||||||||||||||||||| |||||| || ||| | ||||||||| |||  ||||| ||||| |||| |||||||||||||||||||||||    
T  34620694 attcaacacattgaaacttgaaaaagtaattttttctacataaaacttaccaatta-tttctattttagaatccttaacaagtgccctaag 34620605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 41885572 - 41885614
Alignment:
Q  199 ttgaatccttaacaagtgccctaaggacactcgttagcataac 241  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  41885572 ttgaatccttaacaagtgccctaaggacactcgttaacataac 41885614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 16966616 - 16966544
Alignment:
Q  115 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 187  Q
    ||||| || |||||||| || ||| ||||||||||||||||||| ||||||| | ||||||||||||| ||||    
T  16966616 ttttttttggaaattgtgtactcaccacattgaaacttcaaaaatgaactttttctacataaaatttacaaat 16966544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 1905779 - 1905712
Alignment:
Q  170 tacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 237  Q
    ||||| ||||| ||||||||||| |||||||||||||||||| | |||||| ||| |||| |||||||    
T  1905779 tacatgaaattcataaattatttcctcttttgaatccttaaccattgcccttagggcactggttagca 1905712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 4488857 - 4488769
Alignment:
Q  90 ttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaattta 182  Q
    ||||||| |||| |||| |||||||||||||||  ||||||| ||||||||||    |||||| ||||| ||||||| | |||||||||||||    
T  4488857 ttgtttaaaagtcaaaagaagaaactttttcttgaaaattgtatattcaacac----aaacttaaaaaaagaactttttctacataaaattta 4488769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 24980911 - 24980816
Alignment:
Q  119 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 214  Q
    |||||||| |||| ||||||||||||||||||  ||||||| ||||| || ||||||||| |||| |||| |||    ||||| ||||||||||||    
T  24980911 tcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 24989669 - 24989574
Alignment:
Q  119 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 214  Q
    |||||||| |||| ||||||||||||||||||  ||||||| ||||| || ||||||||| |||| |||| |||    ||||| ||||||||||||    
T  24989669 tcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 52698444 - 52698554
Alignment:
Q  109 agaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctt 208  Q
    ||||| |||||||| | |||||| |||||||||||||||||   ||||||  |||||| | | ||||||| |||| |||| ||| |  |||| |||||||    
T  52698444 agaaattttttcttgggaattgtgtattcaacacattgaaataacaaaaaacaactttttctccataaaagttatcaattgtttccattttttaatcctt 52698543  T
Q  209 aacaagtgccc 219  Q
    |||||||||||    
T  52698544 aacaagtgccc 52698554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 34040745 - 34040869
Alignment:
Q  124 gaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 223  Q
    |||||||| |||||||||||| ||||| | |||||  ||| || | ||||||||||||| |||| |||| ||||||| |||| |||||||||| | | |     
T  34040745 gaaattgtgtattcaacacatagaaacattaaaaaa-aacattttctacataaaatttacaaataatttcctcttttaaatctttaacaagtgtcattaa 34040843  T
Q  224 gacactcgttagcataaccctaattt 249  Q
     |||||  ||||||||||||| ||||    
T  34040844 tacacttattagcataacccttattt 34040869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 1411671 - 1411809
Alignment:
Q  88 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 187  Q
    ||||||| ||||||| ||| | |||| ||| |||||| |||  | ||||||||||||||||| || |||||| || ||||| ||||||||| || |||||    
T  1411671 acttgttaagaagtttaaaaaggaaattttatcttaggaatgatgtattcaacacattgaaagtttaaaaagtaa-tttatctacataaaacttgtaaat 1411769  T
Q  188 tattttctct-tttgaatccttaacaagtgccctaaggaca 227  Q
    ||  |||| | |||||||| ||||| |||||| ||||||||    
T  1411770 ta-cttctatatttgaatctttaactagtgccttaaggaca 1411809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 26923221 - 26923177
Alignment:
Q  172 cataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||    
T  26923221 cataaaacttataaattatttcctcttttgaatcattaacaagtg 26923177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 47235508 - 47235596
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    |||| ||||||||| |||||||| | |||||| |||||||||||||| ||| |||| |||| |||    |||||||| |||||||||||    
T  47235508 ttgtgtattcaacaaattgaaacattaaaaagcaactttatttacatgaaagttatcaattgtttctatttttgaattcttaacaagtg 47235596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 237
Target Start/End: Complemental strand, 36995355 - 36995204
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaa-tttataa 185  Q
    |||||||| ||||||  ||| |||||| ||| | || ||||| ||  ||||||  |||||||| || | |||| |||||| | ||| ||||| ||||  |    
T  36995355 cacttgttaagaagtccaaagaagaaattttgttttggaaatggtgcattcaatgcattgaaattttataaagtaactttttctacttaaaaatttacca 36995256  T
Q  186 attattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 237  Q
    ||||||| |  ||||| |||||||||||||||||||||| |||| |||||||    
T  36995255 attatttccatttttgtatccttaacaagtgccctaagggcacttgttagca 36995204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 51972147 - 51972064
Alignment:
Q  137 caacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccct 220  Q
    |||||||||||||||| |||||  |||||| |  ||||||||||||  |||||||||   ||| ||||||||||| ||||||||    
T  51972147 caacacattgaaacttgaaaaattaactttttcaacataaaatttaccaattatttttaatttagaatccttaactagtgccct 51972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 51139291 - 51139337
Alignment:
Q  170 tacataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    |||||||||||| ||||| |||||||||||||| | |||||||||||    
T  51139291 tacataaaatttctaaatcattttctcttttgagttcttaacaagtg 51139337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 6948285 - 6948197
Alignment:
Q  121 ttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 210  Q
    ||||||||||| ||||||| ||||||||| || ||||| | | ||| ||||  ||||||||||||||||| |  |||||| |||||||||    
T  6948285 ttagaaattgtgtattcaagacattgaaattttaaaaatg-attttttttatgtaaaatttataaattatatcttcttttaaatccttaa 6948197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 38332974 - 38333019
Alignment:
Q  168 tttacataaaatttataaattattttctcttttgaatccttaacaa 213  Q
    |||||||||||||| ||||| ||||  |||||||||||||||||||    
T  38332974 tttacataaaatttttaaatcatttattcttttgaatccttaacaa 38333019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 41048121 - 41048012
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgt 232  Q
    |||||||||| |||||| || |||||  |||||| | ||  | |||||||||| |||||||   |||||| | |||||| |||||| |||||| ||| ||    
T  41048121 tattcaacaccttgaaattttaaaaataaactttttctatttcaaatttataatttatttttatttttgagttcttaactagtgccttaaggatacttgt 41048022  T
Q  233 tagcataacc 242  Q
    ||||||||||    
T  41048021 tagcataacc 41048012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 15647259 - 15647335
Alignment:
Q  161 aactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 237  Q
    |||||| | ||| ||||||||||||||||||| |  ||||| |||| |||| | || |||||||||||| |||||||    
T  15647259 aactttttctacttaaaatttataaattatttccatttttgcatccctaactaatgtcctaaggacacttgttagca 15647335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 31375490 - 31375623
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    |||||||||||||||  ||| |||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| || | ||||||| ||||| |||    
T  31375490 cacttgtttagaagtctaaataagaaattttttcttggaaattgtgtattcaacacattgaaactttaaaaaggaacattttctacataagatttacaaa 31375589  T
Q  187 ttattttctcttttgaatccttaacaagtgccct 220  Q
    | |||| ||||| |||||||||||||||||||||    
T  31375590 taatttcctcttctgaatccttaacaagtgccct 31375623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 48600599 - 48600709
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    |||||||||||||||  ||| |||||||||||||||  ||||| | |  |||| |||||||||||| |||||| || ||| | ||| |||||||||||||    
T  48600599 cacttgtttagaagtccaaaaaagaaactttttcttgaaaattatgt--tcaatacattgaaactttaaaaagtaattttttctacgtaaaatttataaa 48600696  T
Q  187 ttattttctcttt 199  Q
    |||||| ||||||    
T  48600697 ttatttcctcttt 48600709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 15985279 - 15985382
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtt 233  Q
    ||||||||||||||||  | |||||| || ||| || ||||||||||||| |||||||| || ||||||||| ||||| |||| ||| ||| |||| |||    
T  15985279 attcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaattatttccttttttgaatctttaaccagtgtccttagggcacttgtt 15985378  T
Q  234 agca 237  Q
    ||||    
T  15985379 agca 15985382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 29577395 - 29577231
Alignment:
Q  85 gacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttata 184  Q
    |||||| ||| |||| ||||||  ||||||||| ||||  ||||||| ||||  ||   ||||||  |||||||| || ||| | |||||||||||||      
T  29577395 gacactagttaagaaattaaaagtagaaactttatcttgaaaattgtgtatttgacttcttgaaatatcaaaaagtaattttttctacataaaatttagc 29577296  T
Q  185 aattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaattt 249  Q
    |||| ||| || |||| |||||||||| | |||||||||| |||  |||||||||||||| ||||    
T  29577295 aattgtttccttttttaaatccttaactaatgccctaagggcacctgttagcataacccttattt 29577231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 31830265 - 31830174
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccctaagg 224  Q
    ||||||||||||||||| || |||||| |||||| | ||||||||| || ||||||| ||||| | |||||||||||||| || |||||||||    
T  31830265 tattcaacacattgaaagtttaaaaagtaactttgtctacataaaacttgtaaatta-tttctatatttgaatccttaactagagccctaagg 31830174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 50173432 - 50173504
Alignment:
Q  171 acataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 243  Q
    ||||||||||||  |||| ||| || ||||||||||||||| |||| ||||||| |||| |||||||||||||    
T  50173432 acataaaatttagcaattgtttccttttttgaatccttaactagtgtcctaagggcacttgttagcataaccc 50173504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 31732155 - 31732064
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttc-tcttttgaatccttaacaagtgcc 218  Q
    |||| ||||||||| |||||||| |||||||| |||||| |  |||| ||| |||| |||||||| | | ||||||||||||||||||||||    
T  31732155 ttgtgtattcaacatattgaaacatcaaaaagcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaacaagtgcc 31732064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 42983913 - 42984012
Alignment:
Q  138 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 237  Q
    |||||||||||| || |||||| ||||||   |||||||||||||||||| |||| |  ||||||||| ||||||||||  || ||| |||| |||||||    
T  42983913 aacacattgaaaatttaaaaagtaactttgactacataaaatttataaatcatttccatttttgaatcattaacaagtgttcttagggcacttgttagca 42984012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 45153551 - 45153645
Alignment:
Q  142 cattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 237  Q
    ||||||||||| | |||| |||||| | ||| |||||||||| |||||||| | |||||| |||||||| ||||| ||||||| |||| |||||||    
T  45153551 cattgaaactttataaagtaactttttctacttaaaatttatcaattatttccacttttgtatccttaaaaagtg-cctaagggcacttgttagca 45153645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 32978065 - 32978155
Alignment:
Q  93 tttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttat 183  Q
    |||| |||| |||| |||||| ||||||||| | |||||  |||||||| ||| |||||||||||| ||| ||| | ||||||||||||||    
T  32978065 tttaaaagtcaaaagaagaaattttttcttaaagattgtgcattcaacatattaaaacttcaaaaaagaattttttctacataaaatttat 32978155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 54413724 - 54413640
Alignment:
Q  161 aactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag--gacactcgttagcataaccc 243  Q
    |||||| |||||||||||||| ||||||| || ||||||| || |||| |||| |||||||||   ||||| |||||||||||||    
T  54413724 aactttttttacataaaatttgtaaattaattcctcttttaaaaccttgacaaatgccctaagaacacacttgttagcataaccc 54413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 11434876 - 11434804
Alignment:
Q  170 tacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataacc 242  Q
    ||||||| ||||| |||| |||| ||||||||||| |||||||||| ||||||   |||| ||||||||||||    
T  11434876 tacataagatttacaaataatttcctcttttgaattcttaacaagttccctaaaatcacttgttagcataacc 11434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 24487773 - 24487872
Alignment:
Q  136 tcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaagtgccctaaggacactcgtta 234  Q
    |||||| ||| |||| |||||||  |||||| | ||||||||| |||| |||| ||| | | ||||||||| |||||||||||||||||| |||| ||||    
T  24487773 tcaacatattaaaacatcaaaaattaactttttctacataaaagttatcaattgtttctattttttgaatcattaacaagtgccctaagggcacttgtta 24487872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 31844964 - 31845047
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 211  Q
    |||| ||||||||| |||| ||||| |||||| || |||   ||||| |||||| |||||||||| || |||||||||||||||    
T  31844964 ttgtgtattcaacatattggaactttaaaaagtaatttttcatacattaaatttgtaaattatttccttttttgaatccttaac 31845047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 50037287 - 50037194
Alignment:
Q  119 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttattta-cataaaatttataaattattttctcttttgaatccttaac 211  Q
    ||||| || |||| ||||||||||||| |||| | |||||  || ||| |||| |||||||||||| |||||||| || ||||||||| |||||    
T  50037287 tcttaaaagttgtgtattcaacacattaaaacattaaaaaataattttttttaacataaaatttatcaattatttccttttttgaatctttaac 50037194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 36924600 - 36924647
Alignment:
Q  168 tttacataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||    
T  36924600 tttacataaaatttaacaattattt-cttttttgaatccttaacaagtg 36924647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 54404311 - 54404371
Alignment:
Q  174 taaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 234  Q
    |||||||||  |||| ||| || ||||||||||||||| |||| |||||||||||| ||||    
T  54404311 taaaatttaacaattgtttacttttttgaatccttaactagtgtcctaaggacacttgtta 54404371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 7176484 - 7176617
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    ||||||||||||||| |||| |||||  ||||| | | ||||||| |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||    
T  7176484 cacttgtttagaagtcaaaagaagaatttttttttga-aaattgtgtattcaacacgttgaaacttcaaaaaagaactttatttgcctaaaatttataaa 7176582  T
Q  187 ttattttctc-ttttgaatccttaacaagtgccct 220  Q
    |||||| ||| ||||||||||||||||||||||||    
T  7176583 ttatttcctctttttgaatccttaacaagtgccct 7176617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 45185423 - 45185577
Alignment:
Q  85 gacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttata 184  Q
    ||||||||||||||||||| || |||||||||||| || |||||||| ||||||||| ||| |||||| ||||| |||  ||||||||||||||||||||    
T  45185423 gacacttgtttagaagttacaaaaagaaactttttattggaaattgtatattcaacatattaaaactttaaaaa-gaaaattatttacataaaatttata 45185521  T
Q  185 aattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataa 240  Q
    ||| ||||| |||||||||| |||| | |||  | ||| |||||| ||||||||||    
T  45185522 aataattttatcttttgaattcttatctagtatcttaaagacacttgttagcataa 45185577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 6939083 - 6938969
Alignment:
Q  110 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 209  Q
    |||||||||| || | |||||| |||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| || |||||    
T  6939083 gaaacttttttttgggaattgtgtattcaaagcattgaaacttcaaaaagaaactttatatacataaaatttataaattatttcctattttaaaacctta 6938984  T
Q  210 acaagtgccctaagg 224  Q
    || | |||| |||||    
T  6938983 accaatgccttaagg 6938969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 38842986 - 38842891
Alignment:
Q  115 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 210  Q
    ||||| ||||||||| | ||||||| ||||||||| |||||||| ||| ||| | |||||||||||  ||||||||||||||||||||||||||||    
T  38842986 ttttttttagaaattatgtattcaatacattgaaatttcaaaaaagaattttttatacataaaattcttaaattattttctcttttgaatccttaa 38842891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 29602123 - 29602039
Alignment:
Q  143 attgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccctaaggaca 227  Q
    ||||||| || |||||| || ||||||||||||||| |||||||||| ||||| | |||||||||||||| ||| |||||||||||    
T  29602123 attgaaagtttaaaaagtaaatttatttacataaaacttataaatta-tttctatatttgaatccttaactagtaccctaaggaca 29602039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 32615819 - 32615972
Alignment:
Q  81 ttaggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatt 180  Q
    ||||| |||||| | ||||||| |||  ||||| ||| |||| ||| | || |||||||||||||||||| | |||||  |||||||||||||| ||| |    
T  32615819 ttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaaacaactttatttacatgaaagt 32615918  T
Q  181 tataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 234  Q
    ||| |||| |||    ||||| ||| ||||||||| |||||||| |||| ||||    
T  32615919 tatcaattgtttctatttttggatctttaacaagtaccctaagggcacttgtta 32615972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 472077 - 472018
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 192  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||| || ||||||||||    
T  472077 tattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattattt 472018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 11766607 - 11766452
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatt-tacataaaatttataa 185  Q
    |||||||||||||||| |||   |||| |||  |||  |||||||  |||||| ||||||||||  ||||||| || ||| || |||||||||||||  |    
T  11766607 cacttgtttagaagtttaaagtggaaattttaccttgaaaattgtgcattcaagacattgaaacaacaaaaagtaatttttttctacataaaatttaaca 11766508  T
Q  186 attattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataac 241  Q
    | ||| |    ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  11766507 aatatctctatttttgaatctttaacaagtgccctaagaacactcgttagcctaac 11766452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 22575804 - 22575846
Alignment:
Q  204 tccttaacaagtgccctaaggacactcgttagcataaccctaa 246  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  22575804 tccttaacaagtgccctaagggcactggttagcataaccctaa 22575846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 39082528 - 39082577
Alignment:
Q  173 ataaaatttataaattattttctcttttgaatccttaacaagtgccctaa 222  Q
    ||||||||||| ||||||||||  ||||||||| ||||||||||||||||    
T  39082528 ataaaatttatcaattattttcctttttgaatctttaacaagtgccctaa 39082577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 42350422 - 42350499
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 211  Q
    |||||| ||||||||| || |||||| || ||| | ||||||||||||||||||||||| |  |||| ||||||||||    
T  42350422 attcaagacattgaaaatttaaaaagtaaatttttctacataaaatttataaattatttccatttttaaatccttaac 42350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 17106201 - 17106287
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccc 219  Q
    ||||||||||||||||| || ||||||  ||||||| ||||||||| || |||||||  |||| | |||||||||||||| |||||||    
T  17106201 tattcaacacattgaaagtttaaaaagttactttatctacataaaacttgtaaatta-cttctatatttgaatccttaactagtgccc 17106287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 42447475 - 42447420
Alignment:
Q  194 ctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaattt 249  Q
    ||||||||||| |||| |||||| ||| ||| |||| |||||||||||||||||||    
T  42447475 ctcttttgaattcttagcaagtgtccttagggcacttgttagcataaccctaattt 42447420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 7859201 - 7859095
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 227  Q
    |||| ||||||||||||| |||| | |||||| |||||| |  ||||||||| ||| |||| |||||| |||| |||| ||||||| |  | ||||||||    
T  7859201 ttgtgtattcaacacattaaaacattaaaaagtaactttttcaacataaaatatatcaattgttttcttttttaaatctttaacaaatatcttaaggaca 7859102  T
Q  228 ctcgtta 234  Q
    || ||||    
T  7859101 cttgtta 7859095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 14955295 - 14955209
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccct 220  Q
    |||||||||||||||| || |||||| |||||| | |  |||||| || ||| ||||||    ||||||||||||||||||||||||    
T  14955295 attcaacacattgaaagtttaaaaagtaactttttctttataaaacttctaagttatttctatttttgaatccttaacaagtgccct 14955209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 42964814 - 42964896
Alignment:
Q  127 attgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 209  Q
    ||||| |||||||||||||||||| |||||||  |||||| | ||||| ||| |||| |||||||| |  |||||| ||||||    
T  42964814 attgtgtattcaacacattgaaacatcaaaaaataactttttctacatgaaagttatcaattatttccatttttgagtcctta 42964896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 13521787 - 13521678
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 227  Q
    |||| ||||| |||||||||||| | |||||  || ||||||||||| ||| |||| ||||||||    ||||| ||||||||||||||  || |||| |    
T  13521787 ttgtgtattctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaagtgatcttaggata 13521688  T
Q  228 ctcgttagca 237  Q
    || |||||||    
T  13521687 cttgttagca 13521678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 13611322 - 13611213
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 227  Q
    |||| ||||| |||||||||||| | |||||  || ||||||||||| ||| |||| ||||||||    ||||| ||||||||||||||  || |||| |    
T  13611322 ttgtgtattctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaagtgatcttaggata 13611223  T
Q  228 ctcgttagca 237  Q
    || |||||||    
T  13611222 cttgttagca 13611213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 31087061 - 31087194
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    ||||| |||| |||| |||| || ||| ||||| ||  || |||| ||||||| ||||| |||||| |||||  |||||| | |  ||||||||| ||||    
T  31087061 cacttctttaaaagtcaaaaaaataaattttttttttaaagttgtgtattcaatacattaaaactttaaaaaaaaactttttctttataaaatttgtaaa 31087160  T
Q  187 ttattttctcttttgaatccttaacaagtgccct 220  Q
    | |||| |||||||||| |  |||||||||||||    
T  31087161 tcatttcctcttttgaacctgtaacaagtgccct 31087194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 32203034 - 32202993
Alignment:
Q  197 ttttgaatccttaacaagtgccctaaggacactcgttagcat 238  Q
    |||||||||||||||||||||||||||| |||| | ||||||    
T  32203034 ttttgaatccttaacaagtgccctaagggcacttgctagcat 32202993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 39900337 - 39900259
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaa 213  Q
    |||||||||||| |||| |||||||| ||  || ||||||||||| |||| |||||||| | | |||||||||||||||||    
T  39900337 attcaacacattaaaacatcaaaaagtaa--ttttttacataaaagttatcaattatttctattttttgaatccttaacaa 39900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 29931099 - 29931215
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaa-ctttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 223  Q
    ||||||| |||||||  ||||||||||| |||||  || |||| | |||||||||||  ||||||||||  | |||||||||||||  |||| |||||||    
T  29931099 aaattgtgtattcaatgcattgaaacttaaaaaaaaaaactttttgtacataaaattcttaaattatttcttgttttgaatccttagtaagtaccctaag 29931198  T
Q  224 gacactcgttagcataa 240  Q
      |||| ||||| ||||    
T  29931199 agcacttgttagtataa 29931215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 5682450 - 5682320
Alignment:
Q  86 acacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 185  Q
    ||||||||||| || || ||| |||||||||||| ||   |||||| || ||||||||||||||||| ||||  ||||||| |  |||||||||||||||    
T  5682450 acacttgtttaaaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataa 5682351  T
Q  186 attattttctcttttgaatccttaacaagtg 216  Q
    || |||| |||||||||||| ||||||||||    
T  5682350 ataatttactcttttgaatctttaacaagtg 5682320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 1863093 - 1863230
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    |||||||| ||||||| ||| || ||| ||| |||| |||||  | ||||||||||||||||| || |||||| |||||||| ||||||||| || ||||    
T  1863093 cacttgttaagaagtttaaaaaataaattttatcttggaaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaa 1863192  T
Q  187 ttattttctct-tttgaatccttaacaagtgccctaagg 224  Q
    ||| ||||| | |||||||||||||| ||||||||||||    
T  1863193 tta-tttctatatttgaatccttaactagtgccctaagg 1863230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 4822614 - 4822528
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 211  Q
    ||||||| |||||| ||||||||||||| ||||| ||||||| | |||||||||||||||||| |||| ||||||| |||| |||||    
T  4822614 aaattgtgtattcaccacattgaaacttaaaaaatgaactttttctacataaaatttataaatcatttcctcttttaaatctttaac 4822528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 19608774 - 19608870
Alignment:
Q  96 agaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 192  Q
    ||||||| ||| | |||||||| |||| ||| ||||||||||||||||||||||| | |||||| |||||| | ||||||||| |||| ||||||||    
T  19608774 agaagttcaaaaaggaaactttatcttggaatttgtctattcaacacattgaaacattaaaaagtaactttttctacataaaaattatcaattattt 19608870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 950707 - 950617
Alignment:
Q  154 aaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 244  Q
    |||||| |||||| | |||||||||| ||  |||| || ||| ||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  950707 aaaaagtaactttttctacataaaatctagcaattgttatcttttttgaatccttaactagtgccctaagggcacttgttagcataaccct 950617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 26449360 - 26449260
Alignment:
Q  87 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 186  Q
    |||||||||||||||  ||| ||||||    |||||| ||||||| ||||||| |||||||||||| |||||| || ||| | |||||||||||||||||    
T  26449360 cacttgtttagaagtccaaagaagaaaaaaattcttaaaaattgtgtattcaaaacattgaaactttaaaaagaaattttttctacataaaatttataaa 26449261  T
Q  187 t 187  Q
    |    
T  26449260 t 26449260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 38328652 - 38328747
Alignment:
Q  119 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 214  Q
    ||||| || |||| |||| || |||||||||| | |||||| |||||| || |||||||||| || |||||||| || ||||||||||||||||||    
T  38328652 tcttataagttgtgtatttaatacattgaaacattaaaaagtaacttttttaacataaaattcatgaattatttccttttttgaatccttaacaag 38328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 8611832 - 8611721
Alignment:
Q  135 ttcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 234  Q
    |||||||||||||||| |||||||| |||||| | ||||| ||| |||| |||| ||| |  ||||||||||||||| |||| | | ||| |||| ||||    
T  8611832 ttcaacacattgaaacatcaaaaagcaactttttctacatgaaaattatcaattgtttccaattttgaatccttaacgagtgtcattagggcacttgtta 8611733  T
Q  235 gcataaccctaa 246  Q
    |||  |||||||    
T  8611732 gcaagaccctaa 8611721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 27695175 - 27695128
Alignment:
Q  168 tttacataaaatttataaattattttctcttttgaatccttaacaagt 215  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||    
T  27695175 tttacataaaatttattaattattttcatttttgaatccttaacaagt 27695128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 9765011 - 9765061
Alignment:
Q  170 tacataaaatttataaattattttctcttttgaatccttaacaagtgccct 220  Q
    ||||||||| |||  |||||||| |||||||||||||||||||||||||||    
T  9765011 tacataaaacttaacaattatttcctcttttgaatccttaacaagtgccct 9765061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 9857801 - 9857920
Alignment:
Q  124 gaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 223  Q
    ||||||||  ||| |||||||||||||  ||||||| |||||| | ||| |||| || || ||| ||||    ||||||||||||| |||||||||| ||    
T  9857801 gaaattgtgcatttaacacattgaaacaacaaaaag-aactttttctacctaaatttcatcaatcatttctaattttgaatccttagcaagtgcccttag 9857899  T
Q  224 gacactcgttagcataaccct 244  Q
    | |||| ||||||||||||||    
T  9857900 ggcacttgttagcataaccct 9857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 14688761 - 14688820
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 193  Q
    |||||||||||||||| || |||||  || ||| ||||||||||| ||||||||||||||    
T  14688761 attcaacacattgaaagtttaaaaactaattttttttacataaaacttataaattatttt 14688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 23245455 - 23245412
Alignment:
Q  173 ataaaatttataaattattttctcttttgaatccttaacaagtg 216  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||    
T  23245455 ataaaatttataaattatttcctcttttgaattcttaacgagtg 23245412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 42035766 - 42035876
Alignment:
Q  125 aaattgtctattcaacacattgaaact-tcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 223  Q
    ||||||| |||| |||||||||||| | | |||||| |||||||||||||||||| |||| |||| | |    ||||| ||||||||||||||  ||||     
T  42035766 aaattgtgtatttaacacattgaaaatattaaaaagcaactttatttacataaaaattatcaattgtgtctatttttggatccttaacaagtgtgctaaa 42035865  T
Q  224 gacactcgtta 234  Q
    | |||||||||    
T  42035866 ggcactcgtta 42035876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 6662097 - 6662194
Alignment:
Q  138 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttag 235  Q
    |||||||||||| || || ||  |||||| | ||||| |||||||||||||||||    |||||||||||||| || ||||| || ||||||| ||||    
T  6662097 aacacattgaaagtttaataaataactttttctacatcaaatttataaattatttcaatttttgaatccttaataaatgccccaaagacactccttag 6662194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 844828 - 844736
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccct 220  Q
    |||| |||||||||||||||||| | |||||| ||| || |   ||||||||| || |||| ||| |  |||| |||||||||||||||||||    
T  844828 ttgtgtattcaacacattgaaacattaaaaagtaacattttcatcataaaattcatcaattgtttccatttttaaatccttaacaagtgccct 844736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 7112063 - 7112016
Alignment:
Q  196 cttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 244  Q
    ||||| ||||||||||||||||||||||| |||| |||| |||||||||    
T  7112063 cttttaaatccttaacaagtgccctaagg-cacttgttatcataaccct 7112016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 24111634 - 24111558
Alignment:
Q  109 agaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 185  Q
    ||||| ||| |||||| |||||| |||| ||||||||||||||| ||||| | ||||| | ||||| ||| ||||||    
T  24111634 agaaagtttatcttaggaattgtgtatttaacacattgaaactttaaaaatggactttttctacatcaaacttataa 24111558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 34103305 - 34103408
Alignment:
Q  142 cattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataac 241  Q
    ||||||||||| ||||| ||||  | | ||||||| ||||| |||| |||  ||||||||||||| ||||||||| ||| ||  |||  |||||||||||    
T  34103305 cattgaaactttaaaaaagaaccgtttctacataagatttacaaat-attccctcttttgaatccataacaagtgtccttagagcacatgttagcataac 34103403  T
Q  242 cctaa 246  Q
    |||||    
T  34103404 cctaa 34103408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 32870548 - 32870618
Alignment:
Q  233 tagcataaccctaa-tttgaactacaaccatctttcatcatcacaggctaggtttttattcatgcgtgctt 302  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  32870548 tagcataaccctaacttttaactacaaccatctttcatcatcacaggctaggccttttttcatgcgtgctt 32870618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 21273743 - 21273638
Alignment:
Q  133 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaagtgccctaaggacactcg 231  Q
    |||||||||||| |||| || |||||| |||||||| |||| ||||||| |||||||||| | | | ||||||||||||| | || |||||| ||||| |    
T  21273743 tattcaacacatggaaagtttaaaaagtaactttatctacacaaaatttgtaaattatttctatttgttgaatccttaactaatgtcctaagaacactgg 21273644  T
Q  232 ttagca 237  Q
    ||||||    
T  21273643 ttagca 21273638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 6067607 - 6067499
Alignment:
Q  112 aactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 211  Q
    |||||| ||||||||||||| ||||||||  ||||||   | |||||| |||||| | ||||| |||||||  ||||||||||| |||| | || |||||    
T  6067607 aactttatcttagaaattgtgtattcaacttattgaacgattaaaaagaaactttttctacatgaaatttaacaattattttcttttttaagtctttaac 6067508  T
Q  212 aagtgccct 220  Q
    |||||||||    
T  6067507 aagtgccct 6067499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 22720474 - 22720440
Alignment:
Q  174 taaaatttataaattattttctcttttgaatcctt 208  Q
    |||||||||||||||||||||||||||||||||||    
T  22720474 taaaatttataaattattttctcttttgaatcctt 22720440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 30775224 - 30775325
Alignment:
Q  112 aactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 211  Q
    |||||| | ||||||||||| ||||||||  |||||||  | |||||  |||||| | || || |||||||  ||||||||||| |||||||||||||||    
T  30775224 aactttattttagaaattgtatattcaacttattgaaagattaaaaaataactttttctatatgaaatttaacaattattttcttttttgaatccttaac 30775323  T
Q  212 aa 213  Q
    ||    
T  30775324 aa 30775325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 29283202 - 29283313
Alignment:
Q  136 tcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctt-ttgaatccttaacaagtgccctaaggacactcgtta 234  Q
    |||| |||||||||| | |||||  ||||| || ||||||||||| || || ||||| || || |||||| ||||||||||||  |||||||||||||||    
T  29283202 tcaagacattgaaacattaaaaaacaacttaatctacataaaattgatcaactattt-ctattcttgaattcttaacaagtgctttaaggacactcgtta 29283300  T
Q  235 gcataaccctaat 247  Q
     | ||||||||||    
T  29283301 acgtaaccctaat 29283313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 30456877 - 30456773
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaagg 224  Q
    |||||||  |||||| | ||||||| || |||||| |||||| | |||  ||||||||| |||||||| |  ||||| |||||||||||||||| |||||    
T  30456877 aaattgtgcattcaatatattgaaattttaaaaagtaactttttatactaaaaatttatcaattatttccatttttgtatccttaacaagtgccttaagg 30456778  T
Q  225 acact 229  Q
     ||||    
T  30456777 gcact 30456773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 9752633 - 9752676
Alignment:
Q  170 tacataaaatttataaattattttctcttttgaatccttaacaa 213  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||    
T  9752633 tacataaaacttataaatcattttctcttttgaatctttaacaa 9752676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 31597597 - 31597514
Alignment:
Q  134 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaatt-attttctcttttgaatccttaacaagtg 216  Q
    |||||||||||| |||| | |||||| |||||| | ||||||||| |||||||||  |||| | |||| |||||||||||||||    
T  31597597 attcaacacattaaaacattaaaaagtaactttttctacataaaagttataaattgtttttattttttaaatccttaacaagtg 31597514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 17590259 - 17590384
Alignment:
Q  125 aaattgtctattcaacacattgaaacttcaaaa-aggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 223  Q
    ||||| || |||||||||||| || ||| |||| |  |||||| | |||||||||||||||||| |||| || ||  |||| |||||||| || |||||     
T  17590259 aaattatccattcaacacattcaagcttaaaaacaaaaactttttctacataaaatttataaatcatttccttttcagaatgcttaacaaatgtcctaac 17590358  T
Q  224 gacactcgttagcataaccctaattt 249  Q
     ||||| || |||||||||| |||||    
T  17590359 aacacttgtcagcataacccaaattt 17590384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 24265215 - 24265251
Alignment:
Q  178 atttataaattattttctcttttgaatccttaacaag 214  Q
    |||||||||| || |||||||||||||||||||||||    
T  24265215 atttataaataatcttctcttttgaatccttaacaag 24265251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 30326704 - 30326804
Alignment:
Q  128 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 227  Q
    |||| |||||||||||||||||| ||||| |  |||||| | ||||| ||| |||| |||| ||  |  |||| ||||||||||||||| |||||| |||    
T  30326704 ttgtgtattcaacacattgaaacatcaaagaacaactttttctacatgaaagttatcaattgttcccatttttaaatccttaacaagtgtcctaagcaca 30326803  T
Q  228 c 228  Q
    |    
T  30326804 c 30326804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 159261 - 159130
Alignment:
Q  90 ttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaatta 189  Q
    ||||||| ||||| ||| |||||||||||| ||  || || | | |||| |||||||||| |||||||   ||| || |||| || ||||| ||||||||    
T  159261 ttgtttaaaagttgaaataagaaactttttattgaaacttttgttttcaccacattgaaaattcaaaattaaacattttttagatgaaattcataaatta 159162  T
Q  190 ttttctcttttgaatccttaacaagtgcccta 221  Q
    |||||| |||||||||||||||||||| ||||    
T  159161 ttttcttttttgaatccttaacaagtgtccta 159130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 47 - 158
Alignment:
Q  110 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 209  Q
    |||||||| ||||| |||||||  |||||||||||||||||  ||||||| |  ||| || |||||||||| || ||| ||||    ||||| ||| |||    
T  47 gaaactttatcttaaaaattgtgcattcaacacattgaaacaacaaaaagtattttttttaacataaaattcatcaatcatttatagttttggatcatta 146  T
Q  210 acaagtgcccta 221  Q
    ||||||||||||    
T  147 acaagtgcccta 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University