View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_high_21 (Length: 326)
Name: NF6900_high_21
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 6191068 - 6191385
Alignment:
| Q |
1 |
tacgtcatagagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttgct |
100 |
Q |
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| T |
6191068 |
tacgtcatagagaatggactctagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttact |
6191167 |
T |
|
| Q |
101 |
tttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6191168 |
tttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaat |
6191267 |
T |
|
| Q |
201 |
tttctttacttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtcttt |
300 |
Q |
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| T |
6191268 |
tttctttacttattggatcagtggtgtcgggaacaataacctg---tccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtcttt |
6191364 |
T |
|
| Q |
301 |
cccatcatagttcttctcact |
321 |
Q |
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|||||||||||| || ||||| |
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| T |
6191365 |
cccatcatagttgttttcact |
6191385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 6184069 - 6184231
Alignment:
| Q |
10 |
gagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttgcttttggcgga |
109 |
Q |
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| T |
6184069 |
gagaatggactcaagtgaattttttaataggctttcaaggttatgcaaggcttctcttacagcaacatcg---cttgtggaacaggttgcttttggcgag |
6184165 |
T |
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| Q |
110 |
gactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttca |
175 |
Q |
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| T |
6184166 |
gactctggacttcccaacaggatgctatcaagttcagcaaaagggtcatcatctgatccatcttca |
6184231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 6184282 - 6184372
Alignment:
| Q |
208 |
acttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtct |
298 |
Q |
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|||||| ||||| |||| || |||||||| | ||| |||||||||| ||||||||| |||||| | ||||||||||||| |||||||| |
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| T |
6184282 |
acttatcagatcattggtttcaggaacaatgatttgttctccttgtatgtttggtttttcttctggattcttggtctcatcacaattgtct |
6184372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 37454529 - 37454249
Alignment:
| Q |
9 |
agagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttgcttttggcgg |
108 |
Q |
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||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
37454529 |
agagaatggactcaagtgatttttccaatagacattcaaggttatgcaaagcttctcttacagcaacatcatcgcttgtggaacaagttgcttttggcga |
37454430 |
T |
|
| Q |
109 |
agactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaattttcttta |
208 |
Q |
| |
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||||||||||||||| |||||| ||||||| ||||| |||| |||||| || ||| ||||||| | || || ||||||| |||| |||||||| |
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| T |
37454429 |
ggactctggacttcccttcaggatcctctcaacttcagaaaaaatgtcctcgtcagatccatcttcggatttgctaagatccaccggtgccttttctttg |
37454330 |
T |
|
| Q |
209 |
cttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatca |
289 |
Q |
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||||||| | || ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
37454329 |
cttattgaaccattggtgtcaggaacaataacttgtcctccttgtatatttgcttttccttttgattgcttggtctcatca |
37454249 |
T |
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