View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_high_27 (Length: 283)
Name: NF6900_high_27
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 44118414 - 44118153
Alignment:
| Q |
13 |
catcagaccttgacttaattgtgtaactctttttcaccaatacatagagattaagtatgataaatgttattaataggataatttgttgtatcggtgatat |
112 |
Q |
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| T |
44118414 |
catcagaccttgacttaattgtgtaactctttttcaccaatacatagagattaagtatgataaatgttattaataggataatttgttgtatcggtgatat |
44118315 |
T |
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| Q |
113 |
atcaatgctgattgtattttattccatctttgtaacataatgtcaaaatttgcaatgctcttaaattaatattcaaattcaacataaatgtttagatcat |
212 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44118314 |
atcaatgttgattgtattttattccatctttgtatcataatgtcaaaatttgcaatgctcttaaattaatattcaaattcaacataaatgtttagatcat |
44118215 |
T |
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| Q |
213 |
ttccttctttatgttggtttctctgattacgtgattgatataggtgtcttgtgtgttgatgt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44118214 |
ttccttctttatgttggtttctctgattacgtgattgatataggtgtcttgtgtgttgatgt |
44118153 |
T |
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