View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_high_32 (Length: 241)

Name: NF6900_high_32
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_high_32
NF6900_high_32
[»] chr1 (9 HSPs)
chr1 (1-223)||(4571060-4571282)
chr1 (111-220)||(4016621-4016730)
chr1 (4-75)||(4014656-4014727)
chr1 (111-220)||(4014787-4014899)
chr1 (11-75)||(4016497-4016561)
chr1 (23-75)||(21855093-21855145)
chr1 (111-215)||(10219126-10219239)
chr1 (11-68)||(17563885-17563942)
chr1 (124-220)||(21855218-21855317)
[»] chr5 (2 HSPs)
chr5 (23-75)||(24330609-24330661)
chr5 (124-220)||(24330734-24330833)
[»] chr7 (13 HSPs)
chr7 (4-68)||(29476013-29476077)
chr7 (34-76)||(29921726-29921768)
chr7 (6-74)||(29881565-29881633)
chr7 (11-74)||(29872022-29872085)
chr7 (26-77)||(29874826-29874877)
chr7 (6-76)||(19779897-19779967)
chr7 (6-76)||(19887416-19887486)
chr7 (4-69)||(29445329-29445394)
chr7 (17-77)||(29107117-29107177)
chr7 (28-74)||(19350826-19350872)
chr7 (34-79)||(22524940-22524985)
chr7 (28-73)||(29459762-29459807)
chr7 (27-75)||(19358206-19358254)
[»] chr4 (4 HSPs)
chr4 (34-75)||(29945855-29945896)
chr4 (5-68)||(53429807-53429870)
chr4 (4-73)||(3560661-3560730)
chr4 (111-164)||(29945742-29945795)
[»] chr2 (10 HSPs)
chr2 (34-75)||(29571551-29571592)
chr2 (111-164)||(29571652-29571705)
chr2 (34-75)||(29578340-29578381)
chr2 (111-164)||(29578441-29578494)
chr2 (34-75)||(29580895-29580936)
chr2 (111-164)||(29580996-29581049)
chr2 (34-75)||(29610184-29610225)
chr2 (111-164)||(29610285-29610338)
chr2 (111-164)||(29609724-29609777)
chr2 (28-74)||(20699218-20699264)
[»] chr8 (1 HSPs)
chr8 (34-76)||(27618723-27618765)
[»] chr3 (1 HSPs)
chr3 (27-76)||(12734534-12734583)
[»] scaffold0464 (1 HSPs)
scaffold0464 (28-76)||(8356-8404)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4571282 - 4571060
Alignment:
Q  1 acgtaaattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatccacctcatagtcccagtatgtatga 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4571282 acgtaaattcaaacccgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatccacctcatagtcccagtatgcatga 4571183  T
Q  101 tcgctagttccaataatttatgttcgctttgctctattatctctcctattataaagaattgtttgggattctagattgctctgaagtaccaatgaatcac 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571182 tcgctagttccaataatttctgttcgctttgctctattatctctcctattataaagaattgtttgggattctagattgctctgaagtaccaatgaatcac 4571083  T
Q  201 catcgtcagaaagaaataatagc 223  Q
    |||||||||||||||||||||||    
T  4571082 catcgtcagaaagaaataatagc 4571060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 4016621 - 4016730
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgtttgggattctagattgctctgaagtaccaatgaatcaccatcgtcaga 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  4016621 caataatttctgttcgctttgctctattatctctcctattatagagaattgtttgggattctagactgctctgaagtatcagtgaatcaccatcctcaga 4016720  T
Q  211 aagaaataat 220  Q
    ||||||||||    
T  4016721 aagaaataat 4016730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 4014656 - 4014727
Alignment:
Q  4 taaattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4014656 taaattcaaacacgtaaacaatgaaagagaaacttactttcaaaaaattggaactaagctttcaacataatc 4014727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 4014787 - 4014899
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattata---aagaattgtttgggattctagattgctctgaagtaccaatgaatcaccatcgtc 207  Q
    ||||||||| |||||||||||||||||||| |||||| | |||    |||||||||||||||||||||||||||||||||| || |||||||||||| ||    
T  4014787 caataatttctgttcgctttgctctattatgtctcctgtcatagaggagaattgtttgggattctagattgctctgaagtatcagtgaatcaccatcctc 4014886  T
Q  208 agaaagaaataat 220  Q
     ||||||||||||    
T  4014887 ggaaagaaataat 4014899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 4016497 - 4016561
Alignment:
Q  11 aaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4016497 aaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaaactttcaacataatc 4016561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 21855093 - 21855145
Alignment:
Q  23 aatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21855093 aatggaagagaaacttactttcaaaaacttggaactaagctttcaacataatc 21855145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 10219239 - 10219126
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgtttg---------ggattctagattgctctgaagtaccaatgaatcacc 201  Q
    ||||||||| |||| |||||||| ||||||||||| | ||||| |||||||||||         ||||||||||||||||| ||||| ||  ||||||||    
T  10219239 caataatttgtgtttgctttgctgtattatctctcatgttatagagaattgtttgaactgttagggattctagattgctctcaagtatcatggaatcacc 10219140  T
Q  202 atcgtcagaaagaa 215  Q
    ||| ||||||||||    
T  10219139 atcctcagaaagaa 10219126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 17563885 - 17563942
Alignment:
Q  11 aaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaa 68  Q
    ||||| ||||||  |||||||| |||||||||||||||||| ||||||||||||||||    
T  17563885 aaacaagtaaaccgtggaagaggaacttactttcaaaaaataggaactaagctttcaa 17563942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 21855218 - 21855317
Alignment:
Q  124 tcgctttgctctattatctctcctattataaaga---attgtttgggattctagattgctctgaagtaccaatgaatcaccatcgtcagaaagaaataat 220  Q
    ||||| ||||||||||||||| |||||||| |||   |||||||| |||||| ||||||||| |||||  |  | ||||||||| |||||||||||||||    
T  21855218 tcgctctgctctattatctcttctattatagagaattattgtttgtgattcttgattgctctcaagtattagggtatcaccatcttcagaaagaaataat 21855317  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 24330609 - 24330661
Alignment:
Q  23 aatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24330609 aatggaagagaaacttactttcaaaaacttggaactaagctttcaacataatc 24330661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 24330734 - 24330833
Alignment:
Q  124 tcgctttgctctattatctctcctattataaaga---attgtttgggattctagattgctctgaagtaccaatgaatcaccatcgtcagaaagaaataat 220  Q
    ||||| ||||||||||||||| |||||||| |||   |||||||| |||||| ||||||||| |||||  |  | ||||||||| |||||||||||||||    
T  24330734 tcgctctgctctattatctcttctattatagagaattattgtttgtgattcttgattgctctcaagtattagggtatcaccatcttcagaaagaaataat 24330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 29476013 - 29476077
Alignment:
Q  4 taaattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaa 68  Q
    |||||||||||| |||||| ||  |||||||||||||||||||||||||| ||||||||||||||    
T  29476013 taaattcaaacaagtaaactataaaagagaaacttactttcaaaaaattgaaactaagctttcaa 29476077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 29921726 - 29921768
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatcc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29921726 aacttactttcaaaaaattggaactaagctttcaacataatcc 29921768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 29881633 - 29881565
Alignment:
Q  6 aattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataat 74  Q
    |||| ||||| |||||  |||| |||| |||||||||||||||||||| ||||||||||||||||||||    
T  29881633 aatttaaacatgtaaatcatgggagaggaacttactttcaaaaaattgaaactaagctttcaacataat 29881565  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 29872085 - 29872022
Alignment:
Q  11 aaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataat 74  Q
    ||||| |||||| |||| |||| |||||||||||||||||||| |||||| |||||||||||||    
T  29872085 aaacaagtaaaccatgggagaggaacttactttcaaaaaattgaaactaaactttcaacataat 29872022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 29874877 - 29874826
Alignment:
Q  26 ggaagagaaacttactttcaaaaaattggaactaagctttcaacataatcca 77  Q
    ||||||||||||||||||||| ||||   |||||||||||||||||||||||    
T  29874877 ggaagagaaacttactttcaacaaatcaaaactaagctttcaacataatcca 29874826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 19779967 - 19779897
Alignment:
Q  6 aattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatcc 76  Q
    ||||||||||  ||||  || ||||||||||||||| ||||||  ||| ||||||||||||||||||||||    
T  19779967 aattcaaacagttaaatcattgaagagaaacttactctcaaaaggttgaaactaagctttcaacataatcc 19779897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 19887416 - 19887486
Alignment:
Q  6 aattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatcc 76  Q
    ||||||||||  ||||  || ||| ||||||||||| |||||| |||| ||||||||||||||||||||||    
T  19887416 aattcaaacaattaaatcattgaatagaaacttactctcaaaagattgaaactaagctttcaacataatcc 19887486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 29445329 - 29445394
Alignment:
Q  4 taaattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaac 69  Q
    |||| ||||||| |||||| ||  || || |||||||||||||||||||| |||||||||||||||    
T  29445329 taaactcaaacaagtaaaccataaaacaggaacttactttcaaaaaattgaaactaagctttcaac 29445394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 29107177 - 29107117
Alignment:
Q  17 gtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataatcca 77  Q
    |||||| || ||| || ||||||||||||||| |||| ||||||||||||||| |||||||    
T  29107177 gtaaaccatagaaaagcaacttactttcaaaatattgaaactaagctttcaacgtaatcca 29107117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 19350826 - 19350872
Alignment:
Q  28 aagagaaacttactttcaaaaaattggaactaagctttcaacataat 74  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||    
T  19350826 aagagaaacttactttcaagaggttgaaactaagctttcaacataat 19350872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 22524940 - 22524985
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatccacc 79  Q
    ||||||||||||| || ||| ||| |||||||||||||||||||||    
T  22524940 aacttactttcaagaagttgaaaccaagctttcaacataatccacc 22524985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 29459762 - 29459807
Alignment:
Q  28 aagagaaacttactttcaaaaaattggaactaagctttcaacataa 73  Q
    ||||| |||||||||| ||||||||| || ||||||||||||||||    
T  29459762 aagaggaacttactttaaaaaaattgaaattaagctttcaacataa 29459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 19358254 - 19358206
Alignment:
Q  27 gaagagaaacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    |||||||||||||||||||| |   || |||||||||||||||||||||    
T  19358254 gaagagaaacttactttcaagaggatgaaactaagctttcaacataatc 19358206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 29945896 - 29945855
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29945896 aacttactttcaaaatattggaactaagctttcaacataatc 29945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 53429807 - 53429870
Alignment:
Q  5 aaattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaa 68  Q
    ||||||||||| |||||| ||| ||||| |||||| ||||||||||||| ||||||||| ||||    
T  53429807 aaattcaaacaagtaaaccatgaaagaggaacttaatttcaaaaaattgaaactaagctctcaa 53429870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 3560661 - 3560730
Alignment:
Q  4 taaattcaaacacgtaaacaatggaagagaaacttactttcaaaaaattggaactaagctttcaacataa 73  Q
    |||||||||||| |||||| |  |||||| ||||||||||||| | |||| || ||||||||||||||||    
T  3560661 taaattcaaacaagtaaaccaacgaagaggaacttactttcaacagattgaaattaagctttcaacataa 3560730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 29945795 - 29945742
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 164  Q
    ||||||||||||||||||| | ||| ||||||||||| || || ||||||||||    
T  29945795 caataatttatgttcgcttagttctgttatctctcctgttttagagaattgttt 29945742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 29571551 - 29571592
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29571551 aacttactttcaaaatattggaactaagctttcaacataatc 29571592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 29571652 - 29571705
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 164  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29571652 caataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29571705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 29578340 - 29578381
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29578340 aacttactttcaaaatattggaactaagctttcaacataatc 29578381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 29578441 - 29578494
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 164  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29578441 caataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29578494  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 29580895 - 29580936
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29580895 aacttactttcaaaatattggaactaagctttcaacataatc 29580936  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 29580996 - 29581049
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 164  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29580996 caataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29581049  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 29610184 - 29610225
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatc 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29610184 aacttactttcaaaatattggaactaagctttcaacataatc 29610225  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 29610285 - 29610338
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 164  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29610285 caataatttatgttcgcttagatctgttatctctcctattatagagaattgttt 29610338  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 29609777 - 29609724
Alignment:
Q  111 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 164  Q
    ||||||||||||||||||| | ||| ||||||||||||||||  ||||||||||    
T  29609777 caataatttatgttcgcttagttctgttatctctcctattatggagaattgttt 29609724  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 20699218 - 20699264
Alignment:
Q  28 aagagaaacttactttcaaaaaattggaactaagctttcaacataat 74  Q
    ||||| |||||||||||||||| ||| |||||| |||||||||||||    
T  20699218 aagaggaacttactttcaaaaagttgaaactaaactttcaacataat 20699264  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 27618765 - 27618723
Alignment:
Q  34 aacttactttcaaaaaattggaactaagctttcaacataatcc 76  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||    
T  27618765 aacttactttcaagaaattgaaaccaagctttcaacataatcc 27618723  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 12734534 - 12734583
Alignment:
Q  27 gaagagaaacttactttcaaaaaattggaactaagctttcaacataatcc 76  Q
    |||||||||||||||||||| |  ||| |||||||||||||| |||||||    
T  12734534 gaagagaaacttactttcaagaggttgaaactaagctttcaaaataatcc 12734583  T

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Target: scaffold0464 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 8404 - 8356
Alignment:
Q  28 aagagaaacttactttcaaaaaattggaactaagctttcaacataatcc 76  Q
    ||||||||||||||||||| |  ||| |||||||||||||| |||||||    
T  8404 aagagaaacttactttcaagaggttgaaactaagctttcaaaataatcc 8356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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