View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_high_33 (Length: 239)
Name: NF6900_high_33
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7328110 - 7327889
Alignment:
| Q |
1 |
cgactcctcagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattg |
100 |
Q |
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| T |
7328110 |
cgactcctcagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattg |
7328011 |
T |
|
| Q |
101 |
gtaggaatccgattgcgtgccaaccagttaacagtgcaattaaattgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacag |
200 |
Q |
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| T |
7328010 |
gtaggaatccgattgcgtgccaaccagttaacagtgcaattaaattgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacag |
7327911 |
T |
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| Q |
201 |
ctaaagtttgaatagttctcca |
222 |
Q |
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||||||||||||||||| |||| |
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| T |
7327910 |
ctaaagtttgaatagttttcca |
7327889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 7311355 - 7311435
Alignment:
| Q |
8 |
tcagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataata |
88 |
Q |
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| T |
7311355 |
tcagcacttggagggagcatcaactttgtgtatgtctcagtccctatatgtagtgaaataatcacaaattcataaataata |
7311435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 7311481 - 7311599
Alignment:
| Q |
104 |
ggaatccgattgcgtgccaaccagttaacagtgcaattaaattgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacagcta |
203 |
Q |
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| T |
7311481 |
ggaatccgattgcgtgccaaccagttaaccgtgcagttgaattgtacaccatcatacattctccaatagctatagagaagctgaagaggcacaaaagata |
7311580 |
T |
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| Q |
204 |
aagtttgaatagttctcca |
222 |
Q |
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||||||| ||||||||||| |
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| T |
7311581 |
aagtttgtatagttctcca |
7311599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 20456415 - 20456359
Alignment:
| Q |
17 |
ggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcaca |
73 |
Q |
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|||||| |||||||||||||||||||||| || ||||||| || |||||||||||| |
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| T |
20456415 |
ggagggggcatcaactttgtgtatgtctcagtacctagatcaagggaaacaatcaca |
20456359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 36260159 - 36260106
Alignment:
| Q |
24 |
gcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaatt |
77 |
Q |
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|||||||||||||||||||||| || | |||| ||||||||||||||||||| |
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| T |
36260159 |
gcatcaactttgtgtatgtctctgtttccagatcaagtgaaacaatcacaaatt |
36260106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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