View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_high_38 (Length: 216)
Name: NF6900_high_38
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_high_38 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7328637 - 7328425
Alignment:
| Q |
1 |
gtatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagcaaatactcacacatt |
100 |
Q |
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| T |
7328637 |
gtatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagcaaatactcacacat- |
7328539 |
T |
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| Q |
101 |
tgaaacgaaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatcctt |
200 |
Q |
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| T |
7328538 |
--aaacgaaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttactttcagcaggttgaaaccagactttcgacataatcctt |
7328441 |
T |
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| Q |
201 |
gatagagtaccaacat |
216 |
Q |
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|||||||||||||||| |
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| T |
7328440 |
gatagagtaccaacat |
7328425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 7306267 - 7306481
Alignment:
| Q |
2 |
tatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagcaaatactcacacattt |
101 |
Q |
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|||||||||| ||| ||||||| || | ||||||||||| || | ||||||||||||||||||| ||||||| |||||||||| ||||| || |||| || |
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| T |
7306267 |
tatatatagataacggagttctaaaaaggtattcggatccgttgattgattcaccatatctatggcaaagttttaaagtaaaggaaataatcgcacaatt |
7306366 |
T |
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| Q |
102 |
gaaacgaaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttg |
201 |
Q |
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| T |
7306367 |
gaaaccaagtaaaaaccaagtacataaattgaaataaatattatgttggagaaaaacctacgttcaataggttgagaccagactttcgacataatccttg |
7306466 |
T |
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| Q |
202 |
atagagtaccaacat |
216 |
Q |
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|||||| |||||||| |
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| T |
7306467 |
atagagaaccaacat |
7306481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 7310817 - 7311033
Alignment:
| Q |
2 |
tatatatagagaactgagttctgaacacgtattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagcaaatactcacacattt |
101 |
Q |
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|||||||| | ||||||||||| |||| ||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||| ||||| ||| ||| | |
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| T |
7310817 |
tatatatatataactgagttctaaacaggtattcggatccttcggttgattcaccata-ctacgacaaagttttaaagtaaaggaaataatcatacaatc |
7310915 |
T |
|
| Q |
102 |
gaaacgaaggcaaaactaa---gtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatcc |
198 |
Q |
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| T |
7310916 |
gaaacctagtaaaaaaaaacaagtacataaactgaaataaatattatgttagaaaaaaacttactttcaataggttgaaaccagactttcgacataatcc |
7311015 |
T |
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| Q |
199 |
ttgatagagtaccaacat |
216 |
Q |
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||||||||| |||||||| |
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| T |
7311016 |
ttgatagagaaccaacat |
7311033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 35205658 - 35205724
Alignment:
| Q |
150 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacat |
216 |
Q |
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| T |
35205658 |
gagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacat |
35205724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 35205498 - 35205575
Alignment:
| Q |
9 |
agagaactgagttctgaacacg-tattcggatcagtcggttgattcaccatatctatgacaaagttctaaagtaaagc |
85 |
Q |
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||||||||||||||| |||| | |||| |||| | ||||||||| | |||||||||||||||||| | ||||||||| |
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| T |
35205498 |
agagaactgagttctaaacatggtatttggatgggccggttgatttagcatatctatgacaaagttttgaagtaaagc |
35205575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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