View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_high_4 (Length: 660)

Name: NF6900_high_4
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_high_4
NF6900_high_4
[»] chr8 (2 HSPs)
chr8 (276-647)||(25588813-25589185)
chr8 (1-172)||(25589289-25589460)
[»] chr5 (2 HSPs)
chr5 (276-647)||(26374028-26374400)
chr5 (1-172)||(26374504-26374675)
[»] chr6 (8 HSPs)
chr6 (421-646)||(14127350-14127576)
chr6 (7-169)||(14126903-14127065)
chr6 (457-645)||(12917333-12917522)
chr6 (298-417)||(14127185-14127304)
chr6 (4-157)||(12927507-12927660)
chr6 (468-646)||(8758022-8758201)
chr6 (315-384)||(12927368-12927437)
chr6 (27-98)||(8758559-8758630)
[»] chr3 (5 HSPs)
chr3 (421-646)||(17918498-17918724)
chr3 (4-169)||(17919018-17919183)
chr3 (276-417)||(17918770-17918911)
chr3 (457-646)||(15428729-15428919)
chr3 (315-384)||(15429010-15429079)
[»] chr2 (3 HSPs)
chr2 (422-644)||(24081380-24081602)
chr2 (4-104)||(24080929-24081029)
chr2 (299-390)||(24081215-24081306)
[»] scaffold0071 (2 HSPs)
scaffold0071 (457-646)||(33319-33509)
scaffold0071 (315-384)||(33159-33228)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 276 - 647
Target Start/End: Complemental strand, 25589185 - 25588813
Alignment:
Q  276 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589185 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 25589086  T
Q  376 gaaagggagcaagtaaggttaagtggcgtagcttgtggtattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589085 gaaagggagcaagtaaggttaagtggcgtagcttgtggtattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 25588986  T
Q  476 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctg-atggggattttattccaattgttcaacagaaaatcattgatgctggctttga 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588985 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttga 25588886  T
Q  575 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588885 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 25588813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 25589460 - 25589289
Alignment:
Q  1 cttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589460 cttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga 25589361  T
Q  101 atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589360 atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg 25589289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 276 - 647
Target Start/End: Complemental strand, 26374400 - 26374028
Alignment:
Q  276 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 375  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374400 caatgagggaggtttttttgttttggagaaggaagaaatggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 26374301  T
Q  376 gaaagggagcaagtaaggttaagtggcgtagcttgtggtattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 475  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374300 gaaagggagcaagtaaggttaagtggcgtagcttgtgatattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 26374201  T
Q  476 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctg-atggggattttattccaattgttcaacagaaaatcattgatgctggctttga 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374200 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttga 26374101  T
Q  575 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374100 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 26374028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 26374675 - 26374504
Alignment:
Q  1 cttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374675 cttcagaaagctcttaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga 26374576  T
Q  101 atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374575 atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg 26374504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 421 - 646
Target Start/End: Original strand, 14127350 - 14127576
Alignment:
Q  421 gatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgc 520  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  14127350 gatgcacccaaggtgattggtgaagcaaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaagaggcgttggctaaattgc 14127449  T
Q  521 tga-tggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttatt 619  Q
    ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14127450 tgaatgggcaatttattccaattgttcaacagaaaatcattgatgctggctttgataatgttcgtgtagtacctagaggtggagataatgtgattttatt 14127549  T
Q  620 ttgccccggtaaagaagacatgatgtc 646  Q
    ||  |||||||||||||||||||||||    
T  14127550 ttttcccggtaaagaagacatgatgtc 14127576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 14126903 - 14127065
Alignment:
Q  7 aaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatggat 106  Q
    |||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| || ||||||||| |    
T  14126903 aaagctcttaataatgtttattttggtcagaataaagtttggacaaatgttgcatgctttgataggtttggtgaggttaaaaaagtaccgttgaatgggt 14127002  T
Q  107 tggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatg 169  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||| ||||    
T  14127003 tggaggatggtaagaaatcggctgcagtaggaggaaaaaataagtcgaaaaataatgctgatg 14127065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 457 - 645
Target Start/End: Complemental strand, 12917522 - 12917333
Alignment:
Q  457 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctga-tggggattttattccaattgttcaacagaaaa 555  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||||||| || | |||||||| |||||| | |||||| ||||| ||||| ||||    
T  12917522 cgcaagtttatttccgataatgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctgaatggggactatattcctattgtgcaacaaaaaa 12917423  T
Q  556 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgt 645  Q
    ||||||||||||| |||||| || |||||||  ||||||||||||||||||||||| || | ||||| ||||| |||||||| |||||||    
T  12917422 tcattgatgctggttttgataatattcgtgtgttacctagaggtggagataatgtggttcttttttgtcccggcaaagaagatatgatgt 12917333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 14127185 - 14127304
Alignment:
Q  298 tcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaa 397  Q
    ||||||||||||||| ||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14127185 tcggagaaggaagaaatggtgttggttagaaaacacgcacttgagcaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaa 14127284  T
Q  398 gtggcgtagcttgtggtatt 417  Q
    ||||||||||| ||| ||||    
T  14127285 gtggcgtagctggtgatatt 14127304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 12927660 - 12927507
Alignment:
Q  4 cagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatg 103  Q
    ||||||||||| ||||||||||  || || ||| ||| ||| ||||||||| | ||||| ||||| |||||||| |||||||  || || |||||||| |    
T  12927660 cagaaagctcttaataatgtttcattaggccagtatagagtgtgggcgaatatcgcacgttttgacaggtttggggaggttaggaaggagctgttgaagg 12927561  T
Q  104 gattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaa 157  Q
      |||||||||||||| ||  |||| | ||| |||||||||||||||| |||||    
T  12927560 agttggaggatggtaaaaaatcggcagaagtgggaggaaaaaataagtcgaaaa 12927507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 646
Target Start/End: Complemental strand, 8758201 - 8758022
Alignment:
Q  468 ttctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctg-atggggattttattccaattgttcaacagaaaatcattgatgct 566  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| | |||| || |||| || ||||| ||   ||| ||||| ||||| |||||||      
T  8758201 ttctgataatgatgatgttgtttgggcaagtaaaggtgcgttggcaagagtgttgaatggagaatttataccttctgtgcaacaaaaaattattgatgtc 8758102  T
Q  567 ggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 646  Q
    || |||||| |||| || ||  | |||||||| ||  |||| ||| |||||||||| || || ||||| |||||||||||    
T  8758101 gggtttgataatgtccgggtgctgcctagagggggcaataacgtggttttattttgtccaggaaaagacgacatgatgtc 8758022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 12927437 - 12927368
Alignment:
Q  315 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 384  Q
    |||||||||||||||  | || |||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12927437 ggcgttggctagaaagcaggctcttgaacaggttaaattagatgctaaggttagtgaggaggaaagggag 12927368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 8758630 - 8758559
Alignment:
Q  27 ttttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgtt 98  Q
    |||||||| ||||| ||| ||||| |||||||| || |||||||||||||| || |||||||||||| ||||    
T  8758630 ttttggtccgaatagagtgtgggcaaatgttgcgcgttttgataggtttggagaagttaaaaaagaattgtt 8758559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 421 - 646
Target Start/End: Complemental strand, 17918724 - 17918498
Alignment:
Q  421 gatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgc 520  Q
    |||||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17918724 gatgcacccaaggtgattggtgaagcaaaagtcacgcgcaagtatcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctacagtgc 17918625  T
Q  521 tga-tggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttatt 619  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17918624 tgaatggggattttattccaattgttcaacagaaaatcattgatgttggctttgaaaatgttcgtgtagtacctagaggtggagataatgtgattttatt 17918525  T
Q  620 ttgccccggtaaagaagacatgatgtc 646  Q
    |||| ||||||||||||||||||||||    
T  17918524 ttgctccggtaaagaagacatgatgtc 17918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 17919183 - 17919018
Alignment:
Q  4 cagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatg 103  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17919183 cagaaagctcttaataatatttattttggtcagaataaagtttgggcgaatgttgcacgctttgataagtttggtgaggttaaaacagaactgttgaatg 17919084  T
Q  104 gattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatg 169  Q
    | |||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| |||||||    
T  17919083 ggttggaggatggtaagaaaccggctgcagtaggaggaaaaaataagtcgaaaattaacgccgatg 17919018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 17918911 - 17918770
Alignment:
Q  276 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 375  Q
    |||||| |||||| ||  || |||||||||||||||| |||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||    
T  17918911 caatgatggaggtattattgattcggagaaggaagaaatggcgttggctagaaaacgcgcacttgagcaagttaaattgaatgctaagggtagtgaggag 17918812  T
Q  376 gaaagggagcaagtaaggttaagtggcgtagcttgtggtatt 417  Q
    ||||||||||||||||||||||| |||| |||| ||| ||||    
T  17918811 gaaagggagcaagtaaggttaagcggcggagctggtgttatt 17918770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 457 - 646
Target Start/End: Complemental strand, 15428919 - 15428729
Alignment:
Q  457 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctga-tggggattttattccaattgttcaacagaaaa 555  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||||||||| || | |||||| | |||||| | |||||| ||||| ||||||||||    
T  15428919 cgcaagtttgtttccgataacgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctaaatggggactgtattcctattgtgcaacagaaaa 15428820  T
Q  556 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 646  Q
    ||||||| ||||| |||||| ||||||| ||  |||||||||| |||||||||||| |||||||||| | ||| ||||| || ||||||||    
T  15428819 tcattgacgctggttttgataatgttcgggtgttacctagaggaggagataatgtggttttattttgtctcggcaaagatgatatgatgtc 15428729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 15429079 - 15429010
Alignment:
Q  315 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 384  Q
    |||||||||||||||  | || ||||||||||||||||| ||||| || |  ||||||||||||||||||    
T  15429079 ggcgttggctagaaagcaggctcttgaacaggttaaattaaatgcgaatgagagtgaggaggaaagggag 15429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 422 - 644
Target Start/End: Original strand, 24081380 - 24081602
Alignment:
Q  422 atgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgct 521  Q
    ||||| |||||||||||||||  || |  || |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| | |||| |    
T  24081380 atgcatccaaggtgaatggtggcgcaattgttacgcgcaagtttcattctgataatgatgatgttgtttgggcaagtaaagggt-gttggcaagagtgtt 24081478  T
Q  522 ga-tggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattt 620  Q
    || || | | |||||||| ||| | ||||||||||||||||||||||| || ||| ||||||| ||  |||||||||| |||||||||| | ||||||||    
T  24081479 gaatgagaactttattcctattatgcaacagaaaatcattgatgctggtttcgataatgttcgggtgttacctagaggaggagataatgaggttttattt 24081578  T
Q  621 tgccccggtaaagaagacatgatg 644  Q
    || ||| |||||||||||||||||    
T  24081579 tgtccccgtaaagaagacatgatg 24081602  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 24080929 - 24081029
Alignment:
Q  4 cagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatg 103  Q
    ||||||| ||| |||||||| | |||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||| |||||| |||| ||||    
T  24080929 cagaaagttctgaataatgtcttttttggtcagaataaagtgtgggaaaatgttgcatgctttgataggtttggtgaggttaagaaagaattgttcaatg 24081028  T
Q  104 g 104  Q
    |    
T  24081029 g 24081029  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 24081215 - 24081306
Alignment:
Q  299 cggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagta 390  Q
    |||||||||||||  ||| ||||||||||||  | |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  24081215 cggagaaggaagagatggtgttggctagaaagcaggcacttgagcaagttaaattgaatgctaagggtagtgaggaggaaagggagaaagta 24081306  T

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Target: scaffold0071 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 457 - 646
Target Start/End: Original strand, 33319 - 33509
Alignment:
Q  457 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctga-tggggattttattccaattgttcaacagaaaa 555  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||||||||| || | |||||| | |||||| | |||||| ||||| ||||||||||    
T  33319 cgcaagtttgtttccgataacgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctaaatggggactgtattcctattgtgcaacagaaaa 33418  T
Q  556 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 646  Q
    ||||||| ||||| |||||| ||||||| ||  |||||||||| |||||||||||| |||||||||| | ||| ||||| || ||||||||    
T  33419 tcattgacgctggttttgataatgttcgggtgttacctagaggaggagataatgtggttttattttgtctcggcaaagatgatatgatgtc 33509  T

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Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 33159 - 33228
Alignment:
Q  315 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 384  Q
    |||||||||||||||  | || ||||||||||||||||| ||||| || |  ||||||||||||||||||    
T  33159 ggcgttggctagaaagcaggctcttgaacaggttaaattaaatgcgaatgagagtgaggaggaaagggag 33228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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