View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_11 (Length: 620)
Name: NF6900_low_11
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 324 - 608
Target Start/End: Original strand, 25697366 - 25697650
Alignment:
| Q |
324 |
gtcaggccagagataaacatacgaccttggcaagaagagttcccagatattaaacaaggtgctcaagttgttagttggaaaaataagaatccgctagcat |
423 |
Q |
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| T |
25697366 |
gtcaggccagagataaacatacgaccttggcaagaagagttcccagatattaaacaaggtgctcaagttgtcagttggaaaaataagaatccgctagcat |
25697465 |
T |
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| Q |
424 |
actggaaaggaaatccagatgttgcatctcctcttcgtaccgaattacttacttgcaatgattctatgaagtggggagcagaaattatgcgtcaggttga |
523 |
Q |
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| T |
25697466 |
actggaaaggaaatccagatgttgcatctcctcttcgtaccgaattacttacttgcaatgattctatgaagtggggagcagaaattatgcgtcaggttga |
25697565 |
T |
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| Q |
524 |
atgcaatggcctttcacaaattggacattaatcgatctttgtaatttcaatatgctttatgtaccaaactttagttgtctgatgt |
608 |
Q |
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| T |
25697566 |
atgcaatggcctttcacaaattggacattaatcgatctttgtaatttcaatatgctttatgtaccaaactttagttgtctgatgt |
25697650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 25697044 - 25697300
Alignment:
| Q |
1 |
aatttttggactaggattgatgtgcatcacctatgtaacgttgatgtttgaattaactcctttaaagtgagcaattcacattagaggaaagtaagtaacc |
100 |
Q |
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| T |
25697044 |
aatttttggactaggattgatgtgcatcacctatgtaacgttgacgtttgaattaactcctttaaagtgagcaatttacattagaggaaagtaagtaatc |
25697143 |
T |
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| Q |
101 |
tcaattgtagatgaataaatcattagtctacatttcaatatattcacagtttgttatgcatgtgtagttaatatcgaccattaatatttattgatgttta |
200 |
Q |
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| T |
25697144 |
tcaattgtagatgaataaatcattagtctacatttcaatatattcacagtttgttatgcatgtgtagttaatatcgaccattaatatttattgatgttta |
25697243 |
T |
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| Q |
201 |
gaattacttactttatcctataaatcgaatgactaattttgaatgaatcaaatgagg |
257 |
Q |
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| T |
25697244 |
gaattacttactttatcctataaatcgaatgactaattttgaatgaatcaaatgagg |
25697300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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