View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6900_low_15 (Length: 496)

Name: NF6900_low_15
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6900_low_15
NF6900_low_15
[»] chr4 (9 HSPs)
chr4 (1-191)||(12043630-12043822)
chr4 (376-480)||(12044006-12044110)
chr4 (377-460)||(30449480-30449563)
chr4 (267-312)||(12043897-12043942)
chr4 (393-464)||(53883312-53883383)
chr4 (393-464)||(53889426-53889497)
chr4 (409-464)||(15333042-15333097)
chr4 (393-464)||(37500791-37500862)
chr4 (386-426)||(41771363-41771403)
[»] chr1 (9 HSPs)
chr1 (377-464)||(8806894-8806981)
chr1 (393-465)||(7577170-7577242)
chr1 (376-461)||(19492578-19492663)
chr1 (393-464)||(49835102-49835173)
chr1 (393-466)||(48743695-48743768)
chr1 (377-465)||(17940798-17940887)
chr1 (377-454)||(17862603-17862680)
chr1 (393-466)||(51739581-51739654)
chr1 (393-463)||(43276573-43276643)
[»] chr3 (3 HSPs)
chr3 (393-469)||(41708545-41708621)
chr3 (393-466)||(36653149-36653221)
chr3 (393-461)||(2004284-2004352)
[»] chr2 (3 HSPs)
chr2 (377-464)||(31493756-31493843)
chr2 (391-467)||(22595647-22595723)
chr2 (393-464)||(35786186-35786257)
[»] scaffold0361 (1 HSPs)
scaffold0361 (393-466)||(10141-10214)
[»] chr8 (6 HSPs)
chr8 (385-464)||(9583950-9584029)
chr8 (376-464)||(25302791-25302879)
chr8 (393-461)||(9949019-9949087)
chr8 (393-454)||(12141705-12141766)
chr8 (393-466)||(16920471-16920543)
chr8 (393-466)||(518877-518950)
[»] scaffold0098 (1 HSPs)
scaffold0098 (377-464)||(17858-17946)
[»] chr7 (4 HSPs)
chr7 (393-461)||(5372502-5372570)
chr7 (397-464)||(17765716-17765783)
chr7 (393-432)||(44266556-44266595)
chr7 (416-461)||(11395912-11395957)
[»] chr6 (2 HSPs)
chr6 (376-461)||(13821800-13821885)
chr6 (107-151)||(26331899-26331943)
[»] chr5 (3 HSPs)
chr5 (408-461)||(6360322-6360375)
chr5 (419-464)||(26002823-26002868)
chr5 (393-469)||(2310876-2310952)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 12043630 - 12043822
Alignment:
Q  1 aatttgcaaaaacagatgaaggaaagcaaattgaaaaagtggttatggatagagttttggaaagatatcgttatttcttgtcaaggtacttatccaataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12043630 aatttgcaaaaacagatgaaggaaagcaaattgaaaaagtggttatggatagagttttggaaagatatcgttatttcttgtcaaggtgcttatccaataa 12043729  T
Q  101 ttaaatgtgaagatttggaaggaggaactcagaatgaaggagataatggagttgcagctgatcaga--atgtcttgaatgacttattgaatta 191  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  12043730 ttaaatgtgaagatttggaaggaggaacttagaatgaaggagataatggagttgcagctgatcagaatatgtcttgaatgacttattgaatta 12043822  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 376 - 480
Target Start/End: Original strand, 12044006 - 12044110
Alignment:
Q  376 gtctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgatcatgagact 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12044006 gtctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgatcatgagact 12044105  T
Q  476 tttga 480  Q
    |||||    
T  12044106 tttga 12044110  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 30449480 - 30449563
Alignment:
Q  377 tctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaac 460  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30449480 tctattatgtgggatcttacgatcctatgatctacgctttttctacaccccaacgatctttagtgggatcccgattttgacaac 30449563  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 12043897 - 12043942
Alignment:
Q  267 agacaattccaatgatgattaatgaaagtgtttttgatgaaaggtg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12043897 agacaattccaatgatgattaatgaaagtgtttttgatgaaaggtg 12043942  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 53883312 - 53883383
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||| ||||||| | |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||    
T  53883312 ttactatcctacaatctacgctttttctatatcccaatgatctttagtcggatcctgatttcgacaaccatg 53883383  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 53889426 - 53889497
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||| ||||||| | |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||    
T  53889426 ttactatcctacaatctacgctttttctatatcccaatgatctttagtcggatcctgatttcgacaaccatg 53889497  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Complemental strand, 15333097 - 15333042
Alignment:
Q  409 tacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||| |||||| |||||| |||||||||  ||| ||||||||||||||||||||||    
T  15333097 tacgatttttcaatacccaaacgatcttaggtgagatcccgattttgacaaccatg 15333042  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 464
Target Start/End: Complemental strand, 37500862 - 37500791
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    ||||||||||||||  |||| |||||| |||||| |  ||||||  ||| ||||||||||||||||||||||    
T  37500862 ttacgatcctacgatttacgatttttcaataccctagagatcttaggtgagatcccgattttgacaaccatg 37500791  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 41771363 - 41771403
Alignment:
Q  386 tgggatcttacgatcctacgacctacgctttttctataccc 426  Q
    ||||||||||||||||||| ||||||||| ||| |||||||    
T  41771363 tgggatcttacgatcctacaacctacgctctttttataccc 41771403  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 377 - 464
Target Start/End: Complemental strand, 8806981 - 8806894
Alignment:
Q  377 tctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  8806981 tctattatgtgggatcttacgatcctacgatctacgccttttctataccccaacaatctttagtaggatcccgattttgacaaccatg 8806894  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 393 - 465
Target Start/End: Complemental strand, 7577242 - 7577170
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatga 465  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7577242 ttacaatcctacgatctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatga 7577170  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 19492663 - 19492578
Alignment:
Q  376 gtctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaacc 461  Q
    ||||||||  ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  19492663 gtctattagatgggatcttacgatcctacgatctacgctctttctatgccccaacgatctttagtaggatcccgattttgacaacc 19492578  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 49835102 - 49835173
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  49835102 ttacgatcctacgatctacgctttttccataccccaacgatctttagtgagatcccgattttgacaaccatg 49835173  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 48743768 - 48743695
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgat 466  Q
    |||| ||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48743768 ttaccatcctacgatctacactctttctataccccaacgatctttagtgggatctcgattttgacaaccatgat 48743695  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 465
Target Start/End: Original strand, 17940798 - 17940887
Alignment:
Q  377 tctattatgtgggatcttacgatcctacgacctacgc-tttttctataccccaacgatctttagtgggatcccgattttgacaaccatga 465  Q
    |||| ||||||||||||||||||||||||| |||| | |||||||||| ||||| ||||| ||||||||| |||||||| ||||||||||    
T  17940798 tctagtatgtgggatcttacgatcctacgatctactcttttttctataacccaatgatctatagtgggattccgattttaacaaccatga 17940887  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 454
Target Start/End: Complemental strand, 17862680 - 17862603
Alignment:
Q  377 tctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgatttt 454  Q
    |||| ||||||| |||| ||||||| | || ||||||||||||||||||| || ||||| |||| |||||||||||||    
T  17862680 tctaatatgtggaatctaacgatccaatgatctacgctttttctatacccaaatgatctatagtaggatcccgatttt 17862603  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 51739581 - 51739654
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgat 466  Q
    ||||||||||||||  |||| |||||| |||||| |||||||||  ||| ||||||||||||||||||| ||||    
T  51739581 ttacgatcctacgatttacgatttttcaatacccaaacgatcttaggtgagatcccgattttgacaaccttgat 51739654  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 463
Target Start/End: Original strand, 43276573 - 43276643
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccat 463  Q
    ||||||||||| ||  |||||| ||||||| ||| |||||||||  |||||||||||| ||||||||||||    
T  43276573 ttacgatcctatgatttacgctctttctatgcccaaacgatcttcggtgggatcccgagtttgacaaccat 43276643  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 393 - 469
Target Start/End: Complemental strand, 41708621 - 41708545
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgatcat 469  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41708621 ttacgatcctacgatctacgctctttctataccccaacgatctttagtgggatctcgattttgacaaccatgatcat 41708545  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 36653149 - 36653221
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgat 466  Q
    |||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  36653149 ttacgatcctacgatctacgctttttctatacctca-cgatctttagtgggatcccgattttgacaaccatgat 36653221  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 2004352 - 2004284
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaacc 461  Q
    |||||||| |||||  |||||| ||||||| ||||||||||||||||| ||| | ||||||||||||||    
T  2004352 ttacgatcttacgatttacgctctttctatgccccaacgatctttagtaggaactcgattttgacaacc 2004284  T

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Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 31493756 - 31493843
Alignment:
Q  377 tctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  31493756 tctattaggtgggatcttacaatcctacgatctacgctttttctataccccaacgatctttagttgaatcccgattttgacagccatg 31493843  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 22595723 - 22595647
Alignment:
Q  391 tcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgatc 467  Q
    ||||| |||||||||| ||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  22595723 tcttaagatcctacgatctacgctttttttataccttaacgatctttagttggatcccgattttgacaaccatgatc 22595647  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 35786186 - 35786257
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||||||||||||| |||| || |||||||||||| |||||||||||||||||| |||||||||||||||||    
T  35786186 ttacgatcctacgatctacactctttctatacccctacgatctttagtgggatctcgattttgacaaccatg 35786257  T

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Target: scaffold0361 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 10214 - 10141
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgat 466  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10214 ttacgatcctacgatctaccctttttctatacctcaacgatctttagtgggatcccgattttgacaaccatgat 10141  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 9583950 - 9584029
Alignment:
Q  385 gtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  9583950 gtgggatcttacgatcttacggtctacgctttttctgtaccccaacgatctttagtgagatcccgattttgacaaccatg 9584029  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 25302791 - 25302879
Alignment:
Q  376 gtctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    ||||||||  ||||||||||||||||||||| |||||||||| ||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  25302791 gtctattacatgggatcttacgatcctacgatctacgcttttcctatacctcaacagtctttagtgggatccggattttgacaaccatg 25302879  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 9949019 - 9949087
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaacc 461  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||    
T  9949019 ttacgatcctacgatctacgctttttctatacctcaacgatctctagtgggatctcgattttgataacc 9949087  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 454
Target Start/End: Complemental strand, 12141766 - 12141705
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgatttt 454  Q
    |||||||||||| |  |||||||||||||||| | |||||||||||||||||||||||||||    
T  12141766 ttacgatcctacaatgtacgctttttctatactctaacgatctttagtgggatcccgatttt 12141705  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 16920543 - 16920471
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgat 466  Q
    |||| ||||||||| ||| |||||| | |||||| ||| ||| ||||||||||| |||||||||||||||||||    
T  16920543 ttacaatcctacgatctatgctttt-caatacccgaacaatcgttagtgggatctcgattttgacaaccatgat 16920471  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 518950 - 518877
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgat 466  Q
    |||||||| |||||  |||||||||| ||  ||| |||||||||| || | ||||||| |||||||||||||||    
T  518950 ttacgatcttacgatttacgctttttttacgcccaaacgatctttggttgaatcccgaatttgacaaccatgat 518877  T

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Target: scaffold0098 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 464
Target Start/End: Complemental strand, 17946 - 17858
Alignment:
Q  377 tctattatgtgggatcttacgatcctacgacctacgctttttct-ataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||| ||| ||||||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||||||||||||| |||||||||    
T  17946 tctaatatttgggatcttacgatcctacgatctacgcttttttttataccccaatgatctatagtgggatcccgattttaacaaccatg 17858  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 5372502 - 5372570
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaacc 461  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5372502 ttaccatcttacgatctacgctttttctataccccaacgatctttagtgggattccgattttgacaacc 5372570  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 17765716 - 17765783
Alignment:
Q  397 gatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  17765716 gatcttacgatctacgctttttctgtaccccaacgatctttagtgagatcccgattttgacaaacatg 17765783  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 432
Target Start/End: Complemental strand, 44266595 - 44266556
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacga 432  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  44266595 ttacgatcctacgatctacgctctttctataccccaacga 44266556  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 11395912 - 11395957
Alignment:
Q  416 tttctataccccaacgatctttagtgggatcccgattttgacaacc 461  Q
    ||||||| ||||||||||||||| | ||||||| ||||||||||||    
T  11395912 tttctatgccccaacgatctttaataggatcccaattttgacaacc 11395957  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 13821885 - 13821800
Alignment:
Q  376 gtctattatgtgggatcttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaacc 461  Q
    |||||||| | |||||||||||||||||||| ||| ||| ||||||| |||||| |||||||||| |||| |||||||||||||||    
T  13821885 gtctattaggcgggatcttacgatcctacgatctaggctctttctatgccccaatgatctttagtaggataccgattttgacaacc 13821800  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 26331943 - 26331899
Alignment:
Q  107 gtgaagatttggaaggaggaactcagaatgaaggagataatggag 151  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  26331943 gtgaagatttggaaggaggaacccaaaatgaaggagataatggag 26331899  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 6360322 - 6360375
Alignment:
Q  408 ctacgctttttctataccccaacgatctttagtgggatcccgattttgacaacc 461  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  6360322 ctacgctctttctatgccccaacgatctttagtaggatcccgattttgacaacc 6360375  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 26002868 - 26002823
Alignment:
Q  419 ctataccccaacgatctttagtgggatcccgattttgacaaccatg 464  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||    
T  26002868 ctataccccaacgatctttagtgagatctcaattttgacaaccatg 26002823  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 2310876 - 2310952
Alignment:
Q  393 ttacgatcctacgacctacgctttttctataccccaacgatctttagtgggatcccgattttgacaaccatgatcat 469  Q
    |||||||||| |||  ||| ||||||| |||||| ||||||||||  ||| ||||||| ||||||||||||| ||||    
T  2310876 ttacgatcctgcgatttacactttttcaatacccaaacgatctttgatggaatcccgagtttgacaaccatggtcat 2310952  T

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