View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_16 (Length: 490)
Name: NF6900_low_16
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_16 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 56167961 - 56167489
Alignment:
| Q |
18 |
caacaatggaaacaactttaatccccatatactgagcaaatttaaccgtctcatcctcaatctgctgagcaagctcgcgagtgggcgccataacaacagc |
117 |
Q |
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| T |
56167961 |
caacaatggaaacaactttaatccccatatactgagcaaatttaaccgtctcatcctcaatctgctgagcaagctcgcgagtgggcgccataacaacagc |
56167862 |
T |
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| Q |
118 |
ataaggaccctccgcttcattctcctcactaataggaggaagcctagtgatataactcatcataggcaaaacaaacgcagcagtcttcccagaacctgtc |
217 |
Q |
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| T |
56167861 |
ataaggaccctccgcttcattctcctcactaataggaggaagcctagtgatataactcaacataggcaaaacaaacgcagcagtcttcccagaacctgtc |
56167762 |
T |
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| Q |
218 |
tcagcaacgccgataacatcgcgctgctgaagtccaagcggaatagcagccatctgaatgggagaaggggttttataaccagccttctccacagccttca |
317 |
Q |
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| T |
56167761 |
tcagcaacgccgataacatcgcgctgctgaagtccaagcggaatagcagccatctgaatgggagaaggggttttataaccagccttctccacagccttca |
56167662 |
T |
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| Q |
318 |
aaagctcttgactcaacttactctcaacccaactcctcataggtcttggaatcttggaacccttataagaaatgttataatcttccctaaatatacgcca |
417 |
Q |
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| T |
56167661 |
aaagctcttgactcaacttactctcaacccaactcctcataggtcttggaatcttggaacccttataagaaatgttataatcttccctaaatatacgcca |
56167562 |
T |
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| Q |
418 |
atccttctcggtcatttcctcaagcttcttctcactccaatgacgatcaaccctcatatcaaacgtatcataa |
490 |
Q |
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| T |
56167561 |
atccctctcggtcatttcctcaagcttcttctcactccaatgacgatcaaccctcatatcaaacgtatcataa |
56167489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Original strand, 707745 - 708215
Alignment:
| Q |
20 |
acaatggaaacaactttaatccccatatactgagcaaatttaaccgtctcatcctcaatctgctgagcaagctcgcgagtgggcgccataacaacagcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |
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| T |
707745 |
acaatggaaacaactttaatccccatatactgagcaaatttaacggtctcatcctcaatctgctgagcaagctcacgagtcggagccataacaacagcat |
707844 |
T |
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| Q |
120 |
aaggaccctccgcttcattctcctcactaataggaggaagcctagtgatataactcatcataggcaaaacaaacgcagcagtcttcccagaacctgtctc |
219 |
Q |
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| T |
707845 |
aaggaccctcagcttcattctcctcactaataggcggcagcctagtgatataactcaacataggcagcacaaacgcagcagtcttcccagaacccgtctc |
707944 |
T |
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| Q |
220 |
agcaacgccgataacatcgcgctgctgaagtccaagcggaatagcagccatctgaatgggagaaggggttttataaccagccttctccacagccttcaaa |
319 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
707945 |
agcaacaccgataacatcgcgttgctgaagtccaagcggaatagaagccatctgaatcggtgaaggggttttataaccagccttctccacagccttcaaa |
708044 |
T |
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| Q |
320 |
agctcttgactcaacttactctcaacccaactcctcataggtcttggaatcttggaacccttataagaaatgttataatcttccctaaatatacgccaat |
419 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
708045 |
atctcttgactcaacttactctcaacccaactcctaataggcctcggaatctttgaacccttatacgaaatattataatcttccctaaaaatacgccaat |
708144 |
T |
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| Q |
420 |
ccttctcggtcatttcctcaagcttcttctcactccaatgacgatcaaccctcatatcaaacgtatcataa |
490 |
Q |
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|| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
708145 |
ccctctcctgcatttcctcaagattcttctcactccaatgacgatcaaccctcatatcaaaagcatcataa |
708215 |
T |
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