View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6900_low_17 (Length: 488)
Name: NF6900_low_17
Description: NF6900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6900_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 31262317 - 31261933
Alignment:
| Q |
15 |
tcacaaacagctacataaccaatgtagcttgattttgttgcaacccatgatggtgctttgtctatccaactaggtagttgaattcctgaggttgcatgta |
114 |
Q |
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| T |
31262317 |
tcacaaacagctacataaccaatgtagcttgattttgttgcaacccatgatggtgctttgtctatccaactaggtagttgaattcctgaggtagcatgta |
31262218 |
T |
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| Q |
115 |
aatgttttgttactttgtaaccggttttgggtaaaccacattttttgaagagtgtggttttggggaacttgtttgtggcatagtttgatgaagaaggatc |
214 |
Q |
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| T |
31262217 |
aatgttttgttactttgtaaccggttttgggtaaaccacattttttgaagagtgtggttttggggaacttgtttgtggcatagtttgatgaagaagggtc |
31262118 |
T |
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| Q |
215 |
aaattcaaaggatttatatgcagcttcaacaaaatggccataacgaaggatttcggaacgaagattattgtctaatgggtctaataaaccttcccaattg |
314 |
Q |
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| T |
31262117 |
gaattcaaaggatttatatgcagcttcaacaaaatggccataacgaaggatttcggaacgaagattattgtctaatgggtctaataaaccttcccaattg |
31262018 |
T |
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| Q |
315 |
gtcataccttggtattctttccatcttttgttaactttcgtagttggaaatggtaatggtgaaaatgttgattttgatgatgaaa |
399 |
Q |
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| T |
31262017 |
gtcataccttggtattctttccatcttttgttaacttttgtagttggaaatggtaatggtgaaaatgttgattttgatgatgaaa |
31261933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 31304390 - 31304136
Alignment:
| Q |
14 |
atcacaaacagctacataaccaatgtagcttgattttgttgcaacccatgatggtgctttgtctatccaactaggtagttgaattcctgaggttgcatgt |
113 |
Q |
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| T |
31304390 |
atcacacacagctacgtatccaatatagcttgattgggttgctacccaatttggtgccttatccatccaacttggtagctgaatcccagaagttgcatgt |
31304291 |
T |
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| Q |
114 |
aaatgttttgttactttgtaaccggttttgggtaaaccacattttttgaagagtgtggttttggggaacttgtttgtggcatagtttgatgaagaaggat |
213 |
Q |
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| T |
31304290 |
aggtatttggtcactttgtaccccgtgttaggtaaaccacaacattctaagagtgtgcttttgggaaatctacaatttgcatacttggaagatgaaggat |
31304191 |
T |
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| Q |
214 |
caaattcaaaggatttatatgcagcttcaacaaaatggccataacgaaggatttc |
268 |
Q |
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| T |
31304190 |
caaactcaaatgatttatacgtagcttcaacaaaatggccatagcgtaggatttc |
31304136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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